Gene Information

Name : SLG_26670 (SLG_26670)
Accession : YP_004835799.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Unknown
Product : putative transposase for insertion sequence element
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 2874313 - 2875851 bp
Length : 1539 bp
Strand : +
Note : -

DNA sequence :
GTGTCGGACACAGCCACTTCCAACCTTGATAAAGATGCCCGGATCGCCGAGCTGGAAGCAGCCTTGGCAGCTCGTGACAC
GCTGATCGACACGCTGCGTTTCCAGCTGGCGCAGTTGCGCCGCATGACGTTCGGCCAATCGTCGGAGAAGATGTCGGCCC
AGATCGAGCAGCTCGAACTGACACTCGAGGAGCTCGAAGGCGAAGCCGCTGTCGCCGATGCCCGCAAGGATGCGCCAGCA
GCCAAGCCCGAACGGCCAGCGCCGGTCCGCAGCCTTCCGCTCCATCTTCCTCGTGCCGAGCAGCGGATCGAACCGGAGGC
AGGCCACTGCAATTGCCCCGATTGTGGCGGCGTCCTGCGCCCGCTGGGTGAGGACAGCGACGAGATGCTCGACGTCCTGC
CGGTGCAGTGGCGCGTGATCCGCACCATCCGCCCCAAGTACAGCTGCCGGTCCTGCGAGAAGATCGTGCAGGCGCCGGCC
CCGGCGAAGGCCATTGCCCGCGGCAAGGCGAGCTTCGCCACGCTCGCCCATGTGGTCGTGTCCAAGTTCGACCATCATCT
CCCGCTCTACCGGCAGGCCGAGATGATGGCAGCGCAGGGCCTCGACATCGACCGCTCGACGCTGGCCGGGTGGGCAGGAC
AAGCCGCACATCTGCTCGACCCGGTCGTCTCCCGGATCCGCGAGGAAGGCCTGAAGGCCGGCAAGATCCACAGCGACGAT
ACGCCCGTGCCGATGCTGATCCCCGGCAAGGGCAAGACCGCGCAGGGCCGGTTGTGGACCTATGTCGTCGATGACCGGGC
CTGCGGATCAACCGCTCCGGCGCTGGTGTGGTACAAGTTCACGCCCGACCGTAGCGGCATTCATCCGCAGACCGAGCTGA
AGAGCTTCACCGGCCTCCTCCAGGCCGATGGCTATGCCGGGTACGAGAAGCTCTATGCCGGCAATCGTATCCAGGAGGTG
GCCTGCTGGGCCCACTTCCGGCGCAAGATATTCGACAACCACCAGACCAGCCCGACGCCGTTGACTACCGACCTGCTCGG
GCGGATCGCCGCGCTCTACCGGATTGAGGACGAGGTTCGCGGCCAACCACCGGATATGCGCCGGCAACGGCGGCAGGAGA
AAACCAGGCCGCTGGTCGATGAGCTGCGCGCGGCCATCGACGATGCCTCGCGCCGCCTGTCGCCCAAGTCCGCGATGGCC
AAGGCGCTCGCCTATGGTCGCAAGCGCTGGATTGCGCTCACACGCTTCCTCGATGACGGCCTGGCCGAGATCGACAACAA
CATTGCGGAACGCGCGATGCGCGGCGTCGCAATCGGCCGGAAAAACTGGCTCTTCGCAGGATCGAAGGCTGGCGGTGAGC
GCGCCGCCGCCATTTATTCGGTCGTCGAAACGGCAAAGCTCAACGGCATCGAGCCGCAGGCCTACATCGCCGATGTCATC
GCAAAGATTGCGGGTGGTTGGCCAGCCTCGCGCTGGGATGAACTCATGCCGTGGAATTGGGTTGCCACCGAGCAACCGCT
GATTGCTGAGGCAGCATAA

Protein sequence :
MSDTATSNLDKDARIAELEAALAARDTLIDTLRFQLAQLRRMTFGQSSEKMSAQIEQLELTLEELEGEAAVADARKDAPA
AKPERPAPVRSLPLHLPRAEQRIEPEAGHCNCPDCGGVLRPLGEDSDEMLDVLPVQWRVIRTIRPKYSCRSCEKIVQAPA
PAKAIARGKASFATLAHVVVSKFDHHLPLYRQAEMMAAQGLDIDRSTLAGWAGQAAHLLDPVVSRIREEGLKAGKIHSDD
TPVPMLIPGKGKTAQGRLWTYVVDDRACGSTAPALVWYKFTPDRSGIHPQTELKSFTGLLQADGYAGYEKLYAGNRIQEV
ACWAHFRRKIFDNHQTSPTPLTTDLLGRIAALYRIEDEVRGQPPDMRRQRRQEKTRPLVDELRAAIDDASRRLSPKSAMA
KALAYGRKRWIALTRFLDDGLAEIDNNIAERAMRGVAIGRKNWLFAGSKAGGERAAAIYSVVETAKLNGIEPQAYIADVI
AKIAGGWPASRWDELMPWNWVATEQPLIAEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 3e-104 52
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-87 51
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 4e-79 49
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 3e-97 49
tnp AEA34686.1 transposase Not tested Not named Protein 9e-101 47
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 4e-99 47
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 4e-99 47
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 6e-100 47
unnamed AAC31494.1 L0015 Not tested LEE Protein 4e-100 47
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 6e-100 47
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 4e-100 47
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-100 47
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 2e-100 47
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-100 47
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 3e-100 47
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 4e-93 46
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 5e-90 45
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 9e-78 44
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 6e-78 44
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 5e-92 43
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 5e-92 43
EXB16 ABD94703.1 ISPpu14 transposase Orf3 Not tested ExoU island B Protein 4e-64 42
RL059 AAP84184.1 transposase Not tested PAPI-1 Protein 4e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_26670 YP_004835799.1 putative transposase for insertion sequence element VFG1700 Protein 6e-88 51
SLG_26670 YP_004835799.1 putative transposase for insertion sequence element VFG1513 Protein 2e-79 49
SLG_26670 YP_004835799.1 putative transposase for insertion sequence element VFG0793 Protein 2e-100 47
SLG_26670 YP_004835799.1 putative transposase for insertion sequence element VFG1736 Protein 3e-76 42