Gene Information

Name : SLG_25940 (SLG_25940)
Accession : YP_004835726.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2807241 - 2808470 bp
Length : 1230 bp
Strand : +
Note : -

DNA sequence :
ATGCTGACCTACATCCAGATCAATGCCGCAAAACCGAGGGACAAGGCCTGGAACCTCTCCGATTCTCAAGGCCTCTACCT
AATCATCCAGCCAAACGGCTCGAAGCTTTGGCGATTTCGATATCGCTTTCTTGACAGACAAAAGACCCTTCACCTCGGTG
GCTGGCCGCAGATCAGCCTCGCTGATGCTCGGACGCGGCGAGACGACGCCAAGAAGCTGGTCGCCAACGGGATCGATCCG
GCGCTGGAAAAGAAGCGCGCGCGGATCGCCGCCAAACATGCTGCGGCGAACACCTTTGAGGCTGTGGCCCAGGAATGGCT
GGTGAAGTGCGAACGGGACGGCCTCGCGCCGGTGACGATCGAAAAGATCAGCTGGCTGCTCGACAAGGCCTACCCAATGA
TCGGCAACATCCCGATCGCCCAGATCACGCCCCATGAGGCGCTCGCCGTCCTGCGCAAGATCGAGGCCACGGGCGCCTAC
GAGAGCGCCCGTCGCATGCGCAGCGTCCTCAGCCGGGTGTTCCGCTATGGCGTGGCGACGGTCCGTTGCGACAAGGACGT
CGCCGCCGACCTTCGCGGCGCGATCGCGGTGCCGAAGGTGAAGCATTTCGCTGCCATCACCCGACCTTCCGAGGTCGGTA
CGCTGCTCCGAGCAATCGATGGCTATACCGGGCACAAGGTGACGGTCATGGCCATGCGCCTGTCGCCGCATGTGCTGCTA
CGTCCCGGCGAACTCCGACAGGCCGAGTGGACCGACATCGATTTCGACGAGGCTATCTGGTTCATTCCGGCCGAGCGGAT
GAAGATGCGACGCCCGCACCGCGTCCCGCTCTCGCGACAGGTGATCGAGATGCTCAAGGAGCTTCACGAGCACACGCATT
GGTGGAAGTATCTGTTTCCGTGCCTCGGCAAGCCGCGCAAGGCGATGTCGGAGAATGCCGTCAATCAGGGCCTGCGCAAG
CTTGGCTACACGACCGACCAGATGACCGCACACGGATTCCGGGCGATGGCAGCGACGCTGCTCAACGAAATGGGCGAGTG
GAACCCCGACGCTATCGAACGACAGCTCGCACATGTCGACACCAATCAGGTCCGGCGCGCCTATGCGCGCGGCGAGTATT
GGGACGAGCGCGTGCGGATGATGCAGTACTGGTCCGACTATCTCGATACGCTGCGGGACGGCGGGAAAGTGCTGTGGGGC
AGCTTCGGCAAAGACGGAACTTCCGGCTGA

Protein sequence :
MLTYIQINAAKPRDKAWNLSDSQGLYLIIQPNGSKLWRFRYRFLDRQKTLHLGGWPQISLADARTRRDDAKKLVANGIDP
ALEKKRARIAAKHAAANTFEAVAQEWLVKCERDGLAPVTIEKISWLLDKAYPMIGNIPIAQITPHEALAVLRKIEATGAY
ESARRMRSVLSRVFRYGVATVRCDKDVAADLRGAIAVPKVKHFAAITRPSEVGTLLRAIDGYTGHKVTVMAMRLSPHVLL
RPGELRQAEWTDIDFDEAIWFIPAERMKMRRPHRVPLSRQVIEMLKELHEHTHWWKYLFPCLGKPRKAMSENAVNQGLRK
LGYTTDQMTAHGFRAMAATLLNEMGEWNPDAIERQLAHVDTNQVRRAYARGEYWDERVRMMQYWSDYLDTLRDGGKVLWG
SFGKDGTSG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 6e-64 44
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-64 44
int AAD44730.1 Int Not tested SHI-2 Protein 4e-64 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-63 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-63 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-63 44
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-64 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 6e-64 43
int ACU09430.1 integrase Not tested LEE Protein 4e-64 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 6e-64 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-63 42
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-63 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-63 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 5e-60 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 7e-60 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-60 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-60 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-58 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-59 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-60 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-60 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-59 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-60 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-59 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 9e-59 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-59 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-59 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_25940 YP_004835726.1 putative integrase VFG0598 Protein 1e-63 44
SLG_25940 YP_004835726.1 putative integrase VFG0783 Protein 2e-64 43
SLG_25940 YP_004835726.1 putative integrase VFG0626 Protein 5e-61 41