Gene Information

Name : SLG_10140 (SLG_10140)
Accession : YP_004834146.1
Strain : Sphingobium sp. SYK-6
Genome accession: NC_015976
Putative virulence/resistance : Virulence
Product : putative capsule polysaccharide export ATP-binding protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 1072941 - 1073588 bp
Length : 648 bp
Strand : +
Note : -

DNA sequence : 
ATGATAATTTGTCAGAATATCTGTAAATCGTACCCACAAGGTGCGGGACGGAAACGCGTGCTCGATGATGTCAATCTTAT
CGTTGAGCGGGGAGAACGCGTCGCATTGCTTGGTCGCAATGGGGCAGGCAAGAGCACCCTCATTAAGTTAATCGGCGGCG
TCGAGATGCCGACTTCGGGCAAGATTACCCGGCAGATGTCCACTTCCTGGCCATTGGGTTTTGCAGGCGGCTTCCAAGGC
AGTCTGACCGGTTACGACAATGCTCGATTCATCGCCCGTATCTACGCGCGGGATTATACTCAGATTCGAGCATTTATTGA
GGATTTCACCGAACTGGGAAGCCAACTAAAGATGCCGGTGAAGACCTATTCATCGGGCATGCGCGCGCGCTTGGCATTCG
CCCTGTCGTTGGCGATCGAGTTCGACTGCTATCTGATTGATGAGATCATCTTGGTCGGCGACCAAAACTTTCATCGGAAA
TGCCATTACGAACTTTTTGAAAAGCGCAGTGACCGCGCCATGATTCTCGCGTCGCATAGTTTAGATATTGTACAGAAATA
CTGTAATCGTGCAGTAATTATAGATAAATGCAAAGCAATTAATCATCCAAATGTGGATATTGCTATCGCAAATTACACAA
AGCTATAA

Protein sequence : 
MIICQNICKSYPQGAGRKRVLDDVNLIVERGERVALLGRNGAGKSTLIKLIGGVEMPTSGKITRQMSTSWPLGFAGGFQG
SLTGYDNARFIARIYARDYTQIRAFIEDFTELGSQLKMPVKTYSSGMRARLAFALSLAIEFDCYLIDEIILVGDQNFHRK
CHYELFEKRSDRAMILASHSLDIVQKYCNRAVIIDKCKAINHPNVDIAIANYTKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 3e-57 57
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 2e-45 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 5e-44 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SLG_10140 YP_004834146.1 putative capsule polysaccharide export ATP-binding protein VFG0696 Protein 2e-56 59
SLG_10140 YP_004834146.1 putative capsule polysaccharide export ATP-binding protein VFG0258 Protein 9e-58 57
SLG_10140 YP_004834146.1 putative capsule polysaccharide export ATP-binding protein VFG2563 Protein 5e-51 52
SLG_10140 YP_004834146.1 putative capsule polysaccharide export ATP-binding protein VFG1449 Protein 5e-46 48