|
Name : LRC_00890 (LRC_00890) Accession : YP_004831358.1 Strain : Lactobacillus ruminis ATCC 27782 Genome accession: NC_015975 Putative virulence/resistance : Virulence Product : exopolysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 103209 - 105218 bp Length : 2010 bp Strand : + Note : - DNA sequence : ATGAAAAACGGTTCAGAAAAGAAATTCGAACATTGGAAACTGATTTCCTTGTACTTGGTTGTTTATGACATTATTGCGGT GAATTTTTCTTATTTTGCCGCACTGTTTCTCAGGTTTGATATGCGCATTTCAAGCATCCCCCCTGAGTATCTGCATGCCT TCATAATGTTTGCACCATTCTATACGGTATTTGCACTAACTGTGTTTCGTTTTCTGAGACTTTATAACAGCTTGTGGCAG TTTGCAAGCTTTGATGAACTTAACAGAATTATTTCTTCATCTGTGATAACAACCGTTTTTCAGATGCTTTTCATGACATG TCTGATTGTCAGGATGCCTGTATCCTATTACATTTTCGGGGCCCTCATTCAGTTTGCCATGATTGTCGGAATACGTTTCA GTTACAGATATATCAATCTTGAGAGAAATCGTCGTTACAATACCAACGCTGCCATTCACAATGTCATGGTAATCGGTGCA GGTGCTGCCGGCAAGACAATCCTGCGAGAGATGCGTAATTCCCAGGGAATGACTGGAAAGGCCTGCTGTGTCATTGATGA CAACCCAAATAAGTGGGACCGGACAATGGAAGGAGTTCCTGTTGTCGGTGGCCGCGACGCAATCTTAAGTGCCGTTAAGA AGTACAGTATTGACCAGATTATGTTTGCAATTCCGTCGGCTTCAACCGAAGACAAGCGGGATATTCTTAATATCTGCAAG GAGACAAAGTGTGAACTCAAGAGTTTGCCGGGAATTTATCAGCTTGCCAACGGTGAGGTGTCGTTGAGCAAGATGAAGGC TGTCAATGTTGAAGATCTTCTTGGAAGAGATCCCATTAAAGTTGACATGGCAGAGGTCTTCAGGCAGCTTACCGGCAAGA CCATCCTTGTTACAGGTGGTGGCGGATCAATCGGCAGCGAATTATGCCGTCAGATTGCAGCACATAATCCGAAGCAGCTA ATTATCTTTGACATTTACGAGAACAATGCCTATGACATTCAGCAGGAACTTGTCCGTAAGTATGGCGATAAGCTCAATCT TGTGACGCTGATAGGGTCCGTTCGTGACAGCCGTCGACTGGACATGATTTTTGACAAGTATCGTCCCGATATTGTCTACC ATGCGGCAGCTCATAAGCATGTTCCGTTAATGGAAGCAAGTCCTAATGAAGCAATCAAGAATAATGTCATCGGGACATAT AAAACGACATATATGGCACTTAAGTACGGAGTTGAGAAATTCGTTCTTATCAGTACGGATAAAGCGGTCAATCCAACGAA CATCATGGGTGCAAGCAAGCGTCTTTGCGAAATGGTTATCCAAAGCATGGAAAGAATCAGCGAGAACGATAATTTTGATT CTCTTCCGTTGCTTCATGATCATAAAAAAGATGGTTTAAAAGAAGAAAAACCAAAAGCAACTAAGACAAAGTTCGTAGCT GTTCGTTTTGGCAATGTTTTGGGGAGCAATGGCAGTGTTATCCCGCTTTTTAAGAAACAGATTGCAGAAGGTGGCCCAGT AACGGTTACTCACCCAGACATTATTCGTTATTTCATGACCATATCTGAAGCTGTCAGTTTAGTTCTTCAAGCTGGTACAT ACGCAAAGGGCGGAGAGATTTTTGTGTTGGATATGGGGTCTCCTGTCAAGATTGATACCTTGGCAAGAAATTTGATCAAA TTGTCAGGACATGAACCAGATGTCGATATTCCGATTGTTTATACGGGTCTTCGAAGCGGAGAAAAGCTGTATGAAGAAAA GCTCATGAAGGAAGAGGGCCTAAAGAAGACTAAAAATGAGTTGATTTTTATCGGTCAGCCGATTCCGTTTGATATGGACA ACTTCTTTAAAGATCTTGAAAATCTGTCACAGGCAAGCTATCAGAATAGCGAAATCATTGTATCAATGGTTGAGAAAGTA GTTTCAACATTCCATCCGGTTGGCGCGCATCCGACTGGCAAGGAAGAAATTTATCAGAAATGGTGTACTGATTCAGAGAG GAACTCATAA Protein sequence : MKNGSEKKFEHWKLISLYLVVYDIIAVNFSYFAALFLRFDMRISSIPPEYLHAFIMFAPFYTVFALTVFRFLRLYNSLWQ FASFDELNRIISSSVITTVFQMLFMTCLIVRMPVSYYIFGALIQFAMIVGIRFSYRYINLERNRRYNTNAAIHNVMVIGA GAAGKTILREMRNSQGMTGKACCVIDDNPNKWDRTMEGVPVVGGRDAILSAVKKYSIDQIMFAIPSASTEDKRDILNICK ETKCELKSLPGIYQLANGEVSLSKMKAVNVEDLLGRDPIKVDMAEVFRQLTGKTILVTGGGGSIGSELCRQIAAHNPKQL IIFDIYENNAYDIQQELVRKYGDKLNLVTLIGSVRDSRRLDMIFDKYRPDIVYHAAAHKHVPLMEASPNEAIKNNVIGTY KTTYMALKYGVEKFVLISTDKAVNPTNIMGASKRLCEMVIQSMERISENDNFDSLPLLHDHKKDGLKEEKPKATKTKFVA VRFGNVLGSNGSVIPLFKKQIAEGGPVTVTHPDIIRYFMTISEAVSLVLQAGTYAKGGEIFVLDMGSPVKIDTLARNLIK LSGHEPDVDIPIVYTGLRSGEKLYEEKLMKEEGLKKTKNELIFIGQPIPFDMDNFFKDLENLSQASYQNSEIIVSMVEKV VSTFHPVGAHPTGKEEIYQKWCTDSERNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-87 | 46 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-88 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRC_00890 | YP_004831358.1 | exopolysaccharide biosynthesis protein | VFG1300 | Protein | 5e-88 | 44 |
