|
Name : LRC_08560 (LRC_08560) Accession : YP_004832074.1 Strain : Lactobacillus ruminis ATCC 27782 Genome accession: NC_015975 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3328 EC number : - Position : 903961 - 905088 bp Length : 1128 bp Strand : - Note : - DNA sequence : ATGGCCCAATTAAATATTACCTTAAATCAAGAGGAAATTCTACAACTTCTTTCAAAGGATCACGATCAGGCATTTCGCGA ACTGCTTCGTAAAAGTCTCAATAGTATTCTGATGGCGGAATCCACTGCTCAGCTCAAGGCTGAGCCTTATGAACGGTCAG AAGAACGCACGGACAGCCGCAACGGCACTCGAGAACGCGAGCTCAAGACACGGATAGGCAAAATCACCTTAACTGTGCCG AGACATCGCAATGTTCCTTTTAAGACTCTTGTTTTCGAGAACTATTCCCGAAGCGAAGCTGCCTTGATCGCCAGTATGGC GGAGATGGTTGTCAGCGGAGTAGCGACGCGTAAAGTGTCGAATATCATGGAAACTTTGTGCGGAACGACATTTTCTAAGT CCTCAGTTTCAGAAGTATGCAAGGATCTGATTGAAAAGGTCAATGAGTTCAAGGACAGACCCTTGACCGGAGACTACCCT TTTTTAATAGTGGATGCAACCTACTTCAAGGTCAGGGACAAACACAGAATTGTTTCCAAAGCGTTTATGATCGCTTATGG TACGAATCAGGAAGGACATCGTGAAATCCTTGGATTTGAAGTATATGACAACGAATCCAAAGAAACTTGGAATTCCTTTC TCCAAAAACTGAAAAAACGTGGCCTCCAAGGGCTTTTGATGATCACTTCTGATGCTCATGAAGGTATTCAGGATGCCGTC AGTAAGGTATTTCCTGAGGTTCCATGGCAAAGGTGCCAGTTTCATTTTGCCAGGAACATTTCGGGAAAATCACCAAAAAA ATATCAGGCAGGCATCAGAGCCGAACTTCAGGAAATGTGGAACTGCGAAACTATAGAAGATGCACGTAAAAAACGTGATG AAATCATCGCTGATTACAGAGATGTTGCTGAATCTGCCATGTCATGCCTCGATGAAGGCTTTGAAAGTGCCATGACCGTC ATGGCGCTTCCTAAGAATTTGCGGAGATATTTCAGAACATCAAACCATATAGAACGACTGAACAAAGAGCTGAAGCGACG TTCTTCCGTCATCGGAATCTTCCCAAACGAGAACTCGCTGATGCGGCTGATGGGGTTCCGTTCTGTTGGAAAGAAACGAT GTCGTTAG Protein sequence : MAQLNITLNQEEILQLLSKDHDQAFRELLRKSLNSILMAESTAQLKAEPYERSEERTDSRNGTRERELKTRIGKITLTVP RHRNVPFKTLVFENYSRSEAALIASMAEMVVSGVATRKVSNIMETLCGTTFSKSSVSEVCKDLIEKVNEFKDRPLTGDYP FLIVDATYFKVRDKHRIVSKAFMIAYGTNQEGHREILGFEVYDNESKETWNSFLQKLKKRGLQGLLMITSDAHEGIQDAV SKVFPEVPWQRCQFHFARNISGKSPKKYQAGIRAELQEMWNCETIEDARKKRDEIIADYRDVAESAMSCLDEGFESAMTV MALPKNLRRYFRTSNHIERLNKELKRRSSVIGIFPNENSLMRLMGFRSVGKKRCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | BAC67574.1 | transposase for insertion sequence element IS256 in transposon Tn4001 | Not tested | Type-IVc SCCmec | Protein | 1e-59 | 43 |
| EF0529 | NP_814305.1 | IS256, transposase | Not tested | Not named | Protein | 1e-59 | 43 |
| SERP1584 | YP_189149.1 | IS256-like transposase | Not tested | ¥ÕSP¥â | Protein | 1e-59 | 43 |
| SERP1587 | YP_189152.1 | IS256-like transposase | Not tested | ¥ÕSP¥â | Protein | 1e-59 | 43 |
| IS256 | BAC22941.1 | IS256 transposase | Not tested | etd PI | Protein | 1e-59 | 43 |
| unnamed | BAC67572.1 | transposase for insertion sequence element IS256 in transposon Tn4001 | Not tested | Type-IVc SCCmec | Protein | 1e-59 | 43 |
