|
Name : LRC_06950 (LRC_06950) Accession : YP_004831921.1 Strain : Lactobacillus ruminis ATCC 27782 Genome accession: NC_015975 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 746853 - 749015 bp Length : 2163 bp Strand : - Note : - DNA sequence : TTGCTATGTCAAAACTGTCGTAAGAATCCAGCAACAATTCATTTAACAACAAGCATCAACGGTCATCAAATAGCAATTGA CCTTTGTTCTGAATGTTATGGCGAATTTCGCGAACGCTCGACCAGATCGCAAAACCAGCCATTGCAAGATCCGTTTGGTT TCAACTCGCTTGACGATCTCTTTAAAGCAATATCGCAAAGAAATCAGCCAAGTCAAAATCAACGGCAGTCTGCGCCTCAA AACGTATCCGGAGGAAACGGCAACACAATTCTCGGCAAATTCGGTTTAGATTTGACTGAAGAAGCCAGAAACGGACGCAT CGATCCCGTCATCGGCCGCGACAAGGAAATATCCCGCGTCATCGAAATTTTAAATCGCCGTACCAAAAACAATCCCGTTC TGATTGGCGAAGCAGGCGTCGGCAAAACAGCGGTTGTCGAAGGGTTGGCTCAAAAAATCGTTGATGGTGACGTACCTCAA AAATTGCTCGACAAGCGCGTTATTCGCCTTGACGTTGTTTCGCTTGTTCAGGGAACAGGATATCGCGGTCAATTTGAAGA ACGAATGCAGCAGTTGATGAGCGAACTCAAACGTGATCAAAATACGATTCTTTTTATCGATGAGATTCACGAAATCGTTG GTGCAGGCGACAATGAAGGTCGCATGGATGCGGGAAACGTTTTAAAGCCTGCGCTTGCTCGCGGTGAACTTCAACTCGTC GGCGCAACGACGCTGAACGAATACCGCACAATCGAAAAAGACGCTGCTTTAGCCAGAAGACTTCAGCCGGTGCGCGTTGA CGAACCATCAACTGCTGAGGCCATCGAAATTCTCAAGGGAATCAAACCTAAATACGAGGCTTATCACCATGTAAAATACA CTGAAGAAGCGATTAACGCTGCCGTTTTGTTGTCATCGCGATATATTCAGGATCGTTTCTTGCCCGATAAGGCCATCGAT TTATTGGATGAGGCTGGCTCAAAAAAGAATTTGACGATCCATGCAGCTGATCCAAAAGTTCTTGATGACAAGATTTCACA CGCCGAAGCCAACAAACAGGCGGCTCTTAAAGAGGAAGACTATGAAAAAGCCGCCTATTACAGAGATCAGGTCAACAAAT TCACGGAAATGAAACAAAATTCCGTTTCTGACGAAAATGCTCCGATCGTCTCCGATAAGGACATGGAAGCAATCGTTGAG GAAATGACTCAAATTCCTGTCGGCGAATTGAAAGAAAAAGAGCAAAATCAATTGCGCAACCTTGCCGATTCCTTGAAAAA ACACGTTATCGGTCAAGATGAGGCGGTAACCAAAACGGCCCGCGCCATCAGAAGAAATCGCGTCGGTTTCAATAAGTCGA ATCGCCCAATCGGAAGTTTCTTGTTTGTCGGACCAACAGGCGTTGGCAAGACCGAAACAGCCAAACAGCTGGCGGAGGAG CTTTTCGGATCCAAAGATTCCATGATCCGTTTCGACATGAGCGAATACATGGAAAAATTCTCAGTTTCAAAACTTATCGG ATCTCCTCCAGGGTACGTCGGGTATGAGGAAGCCGGTCAATTGACCGAACAGGTACGCCGTCATCCGTATAGCTTGATTC TATTGGATGAAATCGAAAAAGCTCATCCCGACGTCATGCATATGTTCCTGCAAATCCTTGATGATGGACGTCTGACTGAT TCCAAGGGTCAGACAGTCAGCTTCAATGATACGATCATCATTATGACAAGCAATGCCGGAAGCGGAGATTCCGTTATCAA TGTTGGTTTTGGCGCCGAAGCAAATGGTACGACCAACTCAATTTTGGACAAACTGAGTCGCTATTTCAAACCTGAATTCT TAAATCGTTTCGATGATATCATCGAATTCAACGCCCTTTCCAAGGAGGATCTTGGAAAAATCGTTGACTTGATGCTTCAA GACGTAAATAAGATGCTGCAAGAAAAGCAAATGTCATTATCCGTAACGCGTCCAGTATGCGACAAGCTCGTTGAGCTGGG TTATGATAAAAAGATGGGTGCAAGACCATTGCGCAGAACGATTCAAGAGCAGATTGAGGACAAGGTTACTGACTTTTACC TTGAGCATCCGTCCGTTAAAAACTTTGCGGCCAAAATCGAAAACAATCAGATTGTCATAGCAGAAAGTACGGCCAAATCA TAA Protein sequence : MLCQNCRKNPATIHLTTSINGHQIAIDLCSECYGEFRERSTRSQNQPLQDPFGFNSLDDLFKAISQRNQPSQNQRQSAPQ NVSGGNGNTILGKFGLDLTEEARNGRIDPVIGRDKEISRVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQKIVDGDVPQ KLLDKRVIRLDVVSLVQGTGYRGQFEERMQQLMSELKRDQNTILFIDEIHEIVGAGDNEGRMDAGNVLKPALARGELQLV GATTLNEYRTIEKDAALARRLQPVRVDEPSTAEAIEILKGIKPKYEAYHHVKYTEEAINAAVLLSSRYIQDRFLPDKAID LLDEAGSKKNLTIHAADPKVLDDKISHAEANKQAALKEEDYEKAAYYRDQVNKFTEMKQNSVSDENAPIVSDKDMEAIVE EMTQIPVGELKEKEQNQLRNLADSLKKHVIGQDEAVTKTARAIRRNRVGFNKSNRPIGSFLFVGPTGVGKTETAKQLAEE LFGSKDSMIRFDMSEYMEKFSVSKLIGSPPGYVGYEEAGQLTEQVRRHPYSLILLDEIEKAHPDVMHMFLQILDDGRLTD SKGQTVSFNDTIIIMTSNAGSGDSVINVGFGAEANGTTNSILDKLSRYFKPEFLNRFDDIIEFNALSKEDLGKIVDLMLQ DVNKMLQEKQMSLSVTRPVCDKLVELGYDKKMGARPLRRTIQEQIEDKVTDFYLEHPSVKNFAAKIENNQIVIAESTAKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 3e-150 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRC_06950 | YP_004831921.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0080 | Protein | 0.0 | 59 |
| LRC_06950 | YP_004831921.1 | ATP-dependent Clp protease ATP-binding subunit | VFG0079 | Protein | 7e-155 | 52 |
