|
Name : LRC_00530 (LRC_00530) Accession : YP_004831322.1 Strain : Lactobacillus ruminis ATCC 27782 Genome accession: NC_015975 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease, ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 58457 - 60556 bp Length : 2100 bp Strand : - Note : - DNA sequence : ATGGCTAGATTTTCATCAGATCCATTTTCAAGCAGCATGGATGACATTTTCAATCAATTAATGGGCGAAATGAACGGATT TAACTCAGAGAGCAGTCGCTATCTGATCAACGGACGCGAAGTAACGCCTGAAGAATTTCAACAGTATCGTCAGACAGGAA AGCTGCCGCAAAATAACATGAAAACAAAAAATACGGTAAAACAACCCGAAAACGGAATTTTGGCAAAACTTGGTCGAAAC TTGACGCAAGAAGCGCGCGATAATAGGCTTGATCCGGTTATCGGACGCAACAAGGAGATTCAAGAAACCGCTGAAATTCT CTCACGCAGAACAAAGAACAACCCCGTCCTTGTCGGAGACGCCGGCGTCGGCAAGACAGCCGTCGTTGAAGGCCTGGCAC AAGCCATCGTCCACGGCGACGTGCCGAATGCGATCAAGAACAAGGAAATCATCAGCATCGATATTTCATCTCTTGAAGCC GGTACTCAGTATCGCGGAAGCTTCGAAGAAAACATTCAAAAACTCGTCAAAGAGGTCAAAGATGCCGGCAATGTCATCTT GTTCTTCGATGAGATTCACCAGATTCTAGGTGCCGGATCTTCCGGTGACGGCAACGGTTCGAAGGGACTGGCCGATATTT TGAAACCGGCCCTTTCACGCGGCGAAATCAGCGTCATCGGTGCAACGACGCAAGACGAGTATCGCAATACAATCATGAAA AATGCAGCATTGGCACGGCGTTTCAATGAAGTTCAGGTCAAGGCTCCAAGCGCAGAAGATACGTTCAAGATCCTCCAGGG AATCAGAACTCTGTATGAAAAGCACCATAACGTCGTTTTGCCGGACAGCGTCCTCAAAGCTGCCGTCGACTACTCGATTC AATATATTCCCCAACGCTCCTTGCCTGACAAAGCCATCGATTTGATCGACATGACCGCGGCTCACCTTGCAGCCAAGCAT CCCGTGACTGACGTCAAGGCGTTGGAAGAAGAAATCGAAAAAGAACGTCAAAAACAAGATGAGGCCGCAGCCAAAGAAGA TTTCAAAACAGCGCAGGAAGCCAAAGACAAAATCAAAGAACTTCAGGCAAAAATCGACAATCAATCAGAATCTCAAAAGG TCGAAGCAACGATCAACGACGTGGCCAAGTCCGTTGAGCGCTTGACGGGCATCCCCGTTTCCAAGATGGGAGCAAGCGAC ATCGAGCGTCTGAAAGGCATCGGCGATCGCTTAAGAGGCAAAGTCATCGGACAAGATGAAGCCGTCAAAGCCGTTGCCAG AGCCATTCGCCGCAATCGTGCCGGCTTTGATGAAGGAAACAGACCGATTGGCAGTTTCCTGTTCGTCGGACCAACGGGTG TCGGCAAGACCGAACTTGCAAAACAGATTGCGCTTGACATGTTTGGCAAAAAGGATGCGATCATCAGACTCGACATGTCC GAATACTCCGATCGAACCGCAGTTTCAAAGCTGATCGGAACGACCGCTGGCTATGTCGGATATGACGACAACAACAACAC GCTGACCGAACGAGTCCGTCGCAACCCATATTCGATCGTCTTGCTTGATGAAATCGAAAAAGCCGATCCGCAGGTAATCA CTTTGCTGTTGCAGGTTCTTGACGACGGTCGTCTGACTGACGGTCAGGGAAACACCATCAACTTCAAGAACACGGTCATC ATCGCCACGTCAAATGCAGGGTTCGGCAACGAAAGCCTGACAGGAAACGACAAGCAGGACGAAGATATCATGAAACGTCT CGCCCCGTACTTCCGCCCTGAATTTCTCAATCGTTTCAACGCCGTCATTGAATTCTCTCACCTCACGAAGGACAATCTCA AAGACATCGTTGAGCTGATGCTGGATGACGTCAACAAGACCCTTGCCAAGAAAGGCATTGATCTGACCGTATCCGATGAA GCAAAGGACTACCTGATTGAAGAAGGCTACGATGAAGCAATGGGCGCTCGCCCGCTCCGTCGCGTCATCGAACAGCAGAT CAGAGACAAGGTTACGGATTTTTACCTCGACAATCTCGACGTCAAGCATCTCGAAGCTGAGATGAACGACGGCGAGCTGG TCATTAAAGAACGCGCATAG Protein sequence : MARFSSDPFSSSMDDIFNQLMGEMNGFNSESSRYLINGREVTPEEFQQYRQTGKLPQNNMKTKNTVKQPENGILAKLGRN LTQEARDNRLDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVHGDVPNAIKNKEIISIDISSLEA GTQYRGSFEENIQKLVKEVKDAGNVILFFDEIHQILGAGSSGDGNGSKGLADILKPALSRGEISVIGATTQDEYRNTIMK NAALARRFNEVQVKAPSAEDTFKILQGIRTLYEKHHNVVLPDSVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLAAKH PVTDVKALEEEIEKERQKQDEAAAKEDFKTAQEAKDKIKELQAKIDNQSESQKVEATINDVAKSVERLTGIPVSKMGASD IERLKGIGDRLRGKVIGQDEAVKAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQIALDMFGKKDAIIRLDMS EYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFKNTVI IATSNAGFGNESLTGNDKQDEDIMKRLAPYFRPEFLNRFNAVIEFSHLTKDNLKDIVELMLDDVNKTLAKKGIDLTVSDE AKDYLIEEGYDEAMGARPLRRVIEQQIRDKVTDFYLDNLDVKHLEAEMNDGELVIKERA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-137 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LRC_00530 | YP_004831322.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0080 | Protein | 4e-150 | 49 |
| LRC_00530 | YP_004831322.1 | ATP-dependent Clp protease, ATP-binding subunit | VFG0079 | Protein | 2e-140 | 46 |
