Gene Information

Name : LRC_04800 (LRC_04800)
Accession : YP_004831723.1
Strain : Lactobacillus ruminis ATCC 27782
Genome accession: NC_015975
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 519728 - 520399 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGCAATCGAACTAAAAAACATCAACAAGTACTACGGAAAAGGCACAAGCAAGGTCCACGTCTTAAAAGACGTCAG
TTTTAAGGCTGAAAAAGGCGAGTTTGTTTTGATCTTGGGCCCGTCAGGTTCCGGAAAAAGCACGTTTCTGACGATTGCCG
GCATCTTGCAAAAACCGACTTCCGGCGACGTTTTGATCAACGGGACGAATACTCGTAACATGCCGATGAATTCCAAAGAA
AAACTTCGCTTGAACAAAATCGGTTTCGTGCTCCAGTCGCATAACCTCGTACCCTATCTGACCGTTTCAGAACAATTCGA
GCTCGTAGACAAAGTTAAAAACACTGAAAATCTCAGTCAAAAAGAACTTGAAAAATTGCTTGAATCGCTTGAAATTTCTA
ATCTGATATCTAAATATCCAAACGAGCTTTCAGGAGGTCAAATGCAGCGTGCTGCCATTGCACGTGCCCTTTATGCAAAT
CCGGAAATCATCCTCGCAGACGAACCGACGGCCGCACTTGATACGCCGCGAGTCAAAGAAGTCGGCAATCTTTTAAGCAA
CCTTGCCCATCGTCAAAACAAGGCCGTCATCACTGTAACTCATGATTTGCGATTATTGGATCAGGCCGACAGAGTCTACG
ATCTTAACGATGGAAAGTTAAATGAAAGATAA

Protein sequence : 
MEAIELKNINKYYGKGTSKVHVLKDVSFKAEKGEFVLILGPSGSGKSTFLTIAGILQKPTSGDVLINGTNTRNMPMNSKE
KLRLNKIGFVLQSHNLVPYLTVSEQFELVDKVKNTENLSQKELEKLLESLEISNLISKYPNELSGGQMQRAAIARALYAN
PEIILADEPTAALDTPRVKEVGNLLSNLAHRQNKAVITVTHDLRLLDQADRVYDLNDGKLNER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 2e-38 48
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 3e-37 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRC_04800 YP_004831723.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 6e-30 42
LRC_04800 YP_004831723.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 7e-25 42