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Name : clpB (LRC_02570) Accession : YP_004831513.1 Strain : Lactobacillus ruminis ATCC 27782 Genome accession: NC_015975 Putative virulence/resistance : Virulence Product : ATP-binding Clp protease subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 281252 - 283756 bp Length : 2505 bp Strand : + Note : - DNA sequence : ATGGACGATTTATATACTGACAGCGCAAAACGCGTAATGGCGATTGCGCAGGAACAGGCAAATTATTTCAGACATCAGGC AATCGGGACCGAACACTTGCTCTTGGCATTGACGATCGAAGACAAAGGCGTGGCAGGTCAGGTCTTAAAACAAGCGATGG TGACGCCAGGCGATGTTCGTCGAGAAATCGAACGCTTAGCCGGGTACGGCAATTTGCTGCGTCAGTCGCCAAGCAACTAT TTGCCGTATTCTCCAAAGGCCAAGTCCGTTTTGGACGAAACCAGGAAACAGGCATTTTTGACTGGGGCCGTCAGAATCGG GACCGAACATTTTCTGTTAGCATTGTTGAGCGATGAGGACATCCTTTCGTCTCGAATTTTAACCAGTCTGCATGTGGATT GCAAAAAACTTCGACAAATTCTTTTGCGCAAGCTCGGCATCAGTCAAAGTCAATTGCGTCGCGTGACAAAAAAAGCTGAG GAACAGCAAGGAAAATCAAAAACGCCGACCTTGGACGAGCTTGGTCGCGACATGACCGAGATGGCTGCTGAAAATATGAT TGATCCCGTAATCGGACGCGAAAAAGAAGTCAATCGGATTATCCAGATTTTGAGTCGCAGGACAAAAAACAATCCGGTTC TTTTAGGCGAACCCGGCGTTGGCAAAACGGCGGTTGTTGAGGGCTTGGCACAAGCCATCGTCGAAGGTTGCGTTCCCGAA AACTTGCTTAATGATCGTTTGATGATGCTTGATATGGGATCGCTTGTTGCCGGCACTAAATATCGCGGCGAATTCGAAGA TCGCTTGAAAAAGATTCTCGAAGAAGTTTACAACGATGGAAACGTCATTTTATTTATTGATGAGATGCACACGCTCATTG GTGCGGGTGGTGCTGAGGGAGCAATCGACGCATCCAATATTTTAAAGCCTGCGCTTGCAAGAGGAGAAGTGCAGGTCATC GGAGCGACGACGCTTGATGAATATCAAAAGTATGTTGAATCAGATCCTGCCTTGGAACGGCGTTTTGCGACCGTTGTCGT TGAAGAACCGAGCCAAGAGGCGGCATTGGAAATTTTGAAAGGAGTTCGTCCGCGCTACGAAGAACACCATAAGGTAAAAA TTTCGGATGAGGCCTTGGAAGAAGCCGTACACTTAAGCAGTCGCTATATTACGAAACGCTTTTTGCCCGATAAGGCAATT GATTTGATGGATGAGGCGGCAGCACGTTTGCGAATCGTTAAAGCAGGAAAAAACGTCAAGCTGCTGGATTTGAACAAAGA ATTGTCCGAAATCGCCAAGAAACAAGAGCAGGCATTGCTTGACGAAAAATTTGAAGAGGCGGCAAAATTGCGCAACCAGG CGTTGAAGACAAAAGAAAAGATTGCCAAAATCGAAGAAGCCAAGCGCAAAAAAGACGAAAAGAAGGAGTACGCCGGAATT GTTTCAGCAGAAGACGTTGCGACGGTCGTTTCCGAGTGGACGGGAGTGCCCGTTACGCAGCTGACAAAAACAGAAAGCGA ACGTTTGATCAATTTGGAAAAAATTCTGCATAAGCGCGTTGTCGGTCAAGATGAAGCTATCAAGGCCGTGTCGAAAGCAA TCAGACGTGCAAGAAGCGGTTTGTCTGATCCGACTCGCCCAATCGGGTCATTCATGTTTCTTGGACCAACAGGCGTCGGA AAGACCGAGCTTGCCAAGGCTTTGGCAGAAGCAATGTTTGGTTCGGAAGACGCCATGATCAGAATCGATATGAGCGAATA TATGGAGAAATATTCAACCAGTCGTTTGATCGGGGCTCCTCCGGGATACGTCGGGTACGATGAAGGCGGACAGCTGACGG AAAAGGTCCGCAACAAGCCTTATTCGGTCGTTTTGCTTGATGAAGTCGAAAAAGCCCATCCGGATGTTTTCAACATCTTG CTTCAAGTGTTGGATGACGGCTATTTGACGGATTCAAAAGGACGAAAGGTCAATTTCAGGAACACGATCATTATTATGAC GTCTAACCTTGGCGCAACGGCATTACGTGACGAAAAATCGGTCGGATTCGGTGCAACCGATCTCTCAAATGATTATGAGG CAATGTCTTCCAAAATCAGAGAATCGCTGAAGAAGCATTTCAGGCCTGAATTCTTAAACAGAATTGACGAAATCGTCATC TTCCATTCACTCGAAAAAGATGAGCTGCACCAAATCGTCAAGTTGATGGCAAAAAACGTCATTAAACGAATTGATGAGCA AAAGGTCAAGCTCAAGGTTACTCCTGCGGCAATCGAAGTCGTCGCAAAAGCCGGCTTTGATCCCGAATATGGTGCTCGAC CGATCAGACGGGCGTTGCAGACCGAAGTTGAGGATCTTTTGAGTGACGCATTGCTTCAAGGAAAGATTCAGATCGGAGAC ACGGTCACGATTGGTGCCAAAAAGGGCAAAATTACTTTGACGGTCAATACGCCTAAAGAAGACAGCGAAAAAAAAGCAGC CGTTAAAAAACAGACTGCCAAATAG Protein sequence : MDDLYTDSAKRVMAIAQEQANYFRHQAIGTEHLLLALTIEDKGVAGQVLKQAMVTPGDVRREIERLAGYGNLLRQSPSNY LPYSPKAKSVLDETRKQAFLTGAVRIGTEHFLLALLSDEDILSSRILTSLHVDCKKLRQILLRKLGISQSQLRRVTKKAE EQQGKSKTPTLDELGRDMTEMAAENMIDPVIGREKEVNRIIQILSRRTKNNPVLLGEPGVGKTAVVEGLAQAIVEGCVPE NLLNDRLMMLDMGSLVAGTKYRGEFEDRLKKILEEVYNDGNVILFIDEMHTLIGAGGAEGAIDASNILKPALARGEVQVI GATTLDEYQKYVESDPALERRFATVVVEEPSQEAALEILKGVRPRYEEHHKVKISDEALEEAVHLSSRYITKRFLPDKAI DLMDEAAARLRIVKAGKNVKLLDLNKELSEIAKKQEQALLDEKFEEAAKLRNQALKTKEKIAKIEEAKRKKDEKKEYAGI VSAEDVATVVSEWTGVPVTQLTKTESERLINLEKILHKRVVGQDEAIKAVSKAIRRARSGLSDPTRPIGSFMFLGPTGVG KTELAKALAEAMFGSEDAMIRIDMSEYMEKYSTSRLIGAPPGYVGYDEGGQLTEKVRNKPYSVVLLDEVEKAHPDVFNIL LQVLDDGYLTDSKGRKVNFRNTIIIMTSNLGATALRDEKSVGFGATDLSNDYEAMSSKIRESLKKHFRPEFLNRIDEIVI FHSLEKDELHQIVKLMAKNVIKRIDEQKVKLKVTPAAIEVVAKAGFDPEYGARPIRRALQTEVEDLLSDALLQGKIQIGD TVTIGAKKGKITLTVNTPKEDSEKKAAVKKQTAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_004831513.1 | ATP-binding Clp protease subunit | VFG0079 | Protein | 0.0 | 56 |
| clpB | YP_004831513.1 | ATP-binding Clp protease subunit | VFG0080 | Protein | 5e-145 | 50 |
