Gene Information

Name : LRC_14920 (LRC_14920)
Accession : YP_004832676.1
Strain : Lactobacillus ruminis ATCC 27782
Genome accession: NC_015975
Putative virulence/resistance : Virulence
Product : two component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1547978 - 1548709 bp
Length : 732 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATTGTTAATGATAGAAGATAACAAGTCAGTGTCAGAAATGATGTCGATGTTTTTCCGAAAGGAGAAGTGGGACGT
TGAATATGCTTATGACGGACTTGAGGCAATTGACATTTTCAAAAAAGATCCGGAAAGCTGGGATATGATAACGCTTGACC
TTAATTTGCCAGGAATGGACGGACTTCAGGTCAATGCCGAATTACGAAAGATTTCGCCAACTGTTCCGATTATTATTTTA
ACCGCCAGGGATTCCGAATCGGATCAGGTTTTGGGACTTGAAATGGGCGCTGATGACTATATCGTCAAGCCGTTCTCACC
GATTACGCTGATTGCAAGAATCAAAGCGCTTCATCGTCGTGCAGAGATGCCACCGCTTGGAAAGAACGGCATCGTGGCTG
AAGAAAGCAATGACGGCTACGATGTTGTGACGTCTCATTTCAAACTCAATTCAAAAACACGCGAAGCATATCTTTCCGGC
AAGCCAATCAACGATTTGACGCCAAAGGAATTCGATCTGCTCAAGACGCTTGCGCAAAAGCCGCGTCAGGTATTTTCAAG
GGATCAGCTGCTTCAATTGGTCTGGGATTATGAATATTATGGGGATGAAAGAACGGTTGATGCCCATATCAAGAAACTGA
GACAAAAGATTGAAAAAGCTGGTCCGCAAGTTATTCAAACGGTATGGGGAGTCGGATATAAATTTGATGATTCTGGAGTA
TCTGATAAATGA

Protein sequence : 
MKLLMIEDNKSVSEMMSMFFRKEKWDVEYAYDGLEAIDIFKKDPESWDMITLDLNLPGMDGLQVNAELRKISPTVPIIIL
TARDSESDQVLGLEMGADDYIVKPFSPITLIARIKALHRRAEMPPLGKNGIVAEESNDGYDVVTSHFKLNSKTREAYLSG
KPINDLTPKEFDLLKTLAQKPRQVFSRDQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKAGPQVIQTVWGVGYKFDDSGV
SDK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-38 44
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRC_14920 YP_004832676.1 two component response regulator HE999704.1.gene2815. Protein 4e-39 43
LRC_14920 YP_004832676.1 two component response regulator NC_012469.1.7685629. Protein 5e-39 42
LRC_14920 YP_004832676.1 two component response regulator AE000516.2.gene3505. Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LRC_14920 YP_004832676.1 two component response regulator VFG1563 Protein 7e-39 44
LRC_14920 YP_004832676.1 two component response regulator VFG1702 Protein 5e-39 44
LRC_14920 YP_004832676.1 two component response regulator VFG1389 Protein 6e-32 41