Gene Information

Name : Rhom172_0600 (Rhom172_0600)
Accession : YP_004824376.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0609
EC number : -
Position : 681020 - 682042 bp
Length : 1023 bp
Strand : -
Note : PFAM: Bacterial transport system permease protein; KEGG: rmr:Rmar_0605 transport system permease protein

DNA sequence : 
ATGAGGATGCCTCCGCTCACGCTGAGCTGCTGGCTGCTCGGGCTGCTGCTCGCCTCGGTGGTGGCCGGGGTTGCGCTCGG
AAGCGTCTCGCTGGCGCCGGACGTGGTGGTGCGCGTGCTGCTCGGGCGGATCACCGGCGCGGCGGTCGATCCGGTGGCCG
AACGGATCGTCTGGCAACTCCGGCTGCCCCGCGTGCTGATGGCCCTGCTGACCGGCGGAGGCCTGGCCATCGTGGGCGTG
GCCATGCAGACCCTGGTGCGCAATCCGCTGGCCGAGCCCTACATTCTGGGACTTTCGAGCGGGGCCAGCGCCGGCGCTTC
GCTGTTCTACCTGGGCTTTCTTCCACCGCTGCTATCGCGCACGCTCTCGATGCCGCTGGCGGCTTTTCTGGGCGCCCTGC
TGGCGCTGACGCTCGTCTATCTTGTGGCGCGACAGAACGGCGTGCTTTCGGTCACGCGGCTGCTGCTGGGCGGCGTGGCG
ATCTCGGCGCTCATGGCTTCGATCACGTCGTTCGTCACGTTCGCCTCGCCCAGTCCCGACAAGCTCCGCGCCGTGCTGTT
CTGGCTGCTGGGTTCGTTCAGCGGGGCCCGCTGGTCGCTGCTGCCGCTGCCCGCTCTGGCCACGCTGCTGGGGCTGCTCG
GCATGCTGGCGCTCACGCGCCCCATGGATCTGCTGCTGCTGGGCGAGGAGCCAGCCGCCCAGCTCGGCATCCCCGTCGAA
CTGGCCAAGCGCCTGCTGATCCTGTTCGCGGCGCTGGTCACCGGGACGCTCGTGGCGTTTTCCGGAACGATCGGCTTCGT
CGGGCTGATCATTCCGCATGCCGTCCGCGCCCTGACGGGCGTGCCACACCGGCGGGTGGTACCGCTGAGCTTCCTGCTGG
GCGCTGCCTTTCTGATCTGGGCCGATCTGGTCGCCCGCCTGCTGCTTCCCGGCACCGAGCTACCGGTGGGTGTCGTCACC
GCCCTCTGCGGCGTGCCGTTCTTTCTGATGCTGCTACGCCGCAGCCATTACCGCTTCGGCTGA

Protein sequence : 
MRMPPLTLSCWLLGLLLASVVAGVALGSVSLAPDVVVRVLLGRITGAAVDPVAERIVWQLRLPRVLMALLTGGGLAIVGV
AMQTLVRNPLAEPYILGLSSGASAGASLFYLGFLPPLLSRTLSMPLAAFLGALLALTLVYLVARQNGVLSVTRLLLGGVA
ISALMASITSFVTFASPSPDKLRAVLFWLLGSFSGARWSLLPLPALATLLGLLGMLALTRPMDLLLLGEEPAAQLGIPVE
LAKRLLILFAALVTGTLVAFSGTIGFVGLIIPHAVRALTGVPHRRVVPLSFLLGAAFLIWADLVARLLLPGTELPVGVVT
ALCGVPFFLMLLRRSHYRFG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecD AAL08452.1 FecD Virulence SRL Protein 1e-19 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_0600 YP_004824376.1 ABC transporter permease BAC0163 Protein 7e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_0600 YP_004824376.1 ABC transporter permease VFG1043 Protein 7e-20 41