Gene Information

Name : Rhom172_0469 (Rhom172_0469)
Accession : YP_004824250.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Unknown
Product : transketolase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0021
EC number : 2.2.1.1
Position : 521703 - 523751 bp
Length : 2049 bp
Strand : +
Note : TIGRFAM: Transketolase, bacterial-like; KEGG: rmr:Rmar_0472 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal

DNA sequence :
ATGCAGGAACAGAAGGCGACGGAGGCGATTCGGGAAACCGACTTTTCGCCGGGCGAACTGGACAATCTGTGCATCAATAC
GATTCGATTCCTGGCCGTCGATGCCGTCGAGCAGGCGAAGTCCGGCCATCCGGGCATGCCGATGGGCGCGGCGCCGATGG
CCTACGTGCTCTGGACCCGGCATCTGCGGCACAATCCAAGCGATCCGAAGTGGCCGAACCGGGATCGGTTCGTGCTTTCG
GCCGGTCATGGTTCGATGTTGCTCTATGCGCTGCTGCATCTGACTGGCTACGACCTGCCCATGGAGGAGCTGCAGCGCTT
TCGTCAGTGGGGATCGCGCACGCCGGGCCATCCGGAATACGGGCTGACGCCCGGGGTCGAGACCACGACGGGACCGCTGG
GCCAGGGCTTCGGAAATGCCGTCGGGATGGCGATCGCCGAGCAGTATCTGGCGGCACATTTCAACCGGGACGGATTCCCG
CTGTTTGACCATTTCACGTACGTGATCGCCTCCGACGGCGACCTGATGGAAGGTATTTCGCACGAGGCGGCTTCGCTGGC
CGGACATCTCGGGCTGGGGAAGTTGATCGTGCTCTACGATGACAACGACATTTCCATCGATGGCTCGACGGACGTCACCT
TCACCGAGGACGTCGGCGCGCGCTTTGAGGCCTACGGCTGGCATGTGCAGCGCGTGGACGACGGGAACGACCTGGTCGCC
ATCGATGCGGCGCTTCGGCAGGCCAAAGCCGAGACCGAACGCCCTTCGCTGATCATCGTGCGCACGCACATCGGCTACGG
AAGCCCGAACAAGCAGGACACGCCCGCCGCGCACGGTGCGCCGCTCGGTCCCGACGAGGTGCGCCTGACCAAGCGCAACC
TGGGCTGGCCCGAGGACAAAACCTTCTACGTGCCGGAGGAGGTCTACCGGCACATGCGGCAGGCCGTCACGCGGGGGCAG
CAGTGGCAGGCCGAATGGGAGGCGCTGCGCGCCCGCTATCGGGAGGCCTATCCCGCCGAAGCTGCCGAACTGGACCGCTG
GCTGAGCCGGCGGTTGCCCGAAGGGTGGAGCGAGGGGCTTCCGACCTTCGAGGCGGGCAAGGCCGTGGCCACCCGCAATG
CCGGCGGGGTCGTGCTCGACGTACTGGCCGCCCGCATGCCCGAGTTGATCGGCGGCTCGGCCGACCTGGCCGAGTCGAAC
AAAACGCATCCGAAAGGGCGCGAAGCCTTCAGCCGCGATAACCGCAGGGGCGGCTACATCCACTTCGGGGTGCGCGAGCA
CGCCATGGCGGCCATCTGCAACGGGCTTTCGCTGCACGGACTGCGGGCCTACGCGAGCACCTTCCTGGTCTTCAGCGATT
ACCTGCGGCCGTCGCTGCGGCTGAGTGCCCTGATGGAACAGCCCGTGATCTACGTGTTCACACACGACTCGATCGGGCTG
GGGGAGGACGGTCCCACGCATCAGCCGATCGAGCATCTGGCCAGCCTGTGTGCCATCCCGCACGTGGTGGTGCTGCGGCC
AGCCGACGCGACCGAGACGGTGGAAGCCTGGAAGGTGGCGCTCGAGCGCGAGGACGGTCCCACGGTGCTCGTACTGACGC
GTCAGAACGTGCCGGTGCTGGACCGGAGTCGCCTGGCCCCGGCCGAGGGCGTGCGCCGCGGCGCTTACGTGCTCAGAGAA
GCGCAGGGCACCTTGCAGGCGATCCTGCTGGCTTCCGGCAGCGAAGTACATGTGGCGCTGGCGGCTGCCGAACAGCTCGA
AGCCGAAGGCATCGGCACGCGCGTCGTCAGCGTGCCTTCCTGGGAGCTGTTCAAGCAGCAGGAGGCGGCCTACCGGGAAT
CGGTGCTCCCGCCGGAGGTAACCGTACGGGTGGCCGTCGAAGCCGGGGTCGGACAGGGATGGGAGCAGTTCGTGGGGTGC
CGGGGCCGCATCGTCAGCATCGAGCGCTTCGGCGCTTCGGCCCCCGGCAAGGTCCTGTTCGAAAAATTCGGCTTCACGCC
CGAGCGGGTGGCCGGAGAAGTACGTGCGCTGCTGGCGCAGAACCATTGA

Protein sequence :
MQEQKATEAIRETDFSPGELDNLCINTIRFLAVDAVEQAKSGHPGMPMGAAPMAYVLWTRHLRHNPSDPKWPNRDRFVLS
AGHGSMLLYALLHLTGYDLPMEELQRFRQWGSRTPGHPEYGLTPGVETTTGPLGQGFGNAVGMAIAEQYLAAHFNRDGFP
LFDHFTYVIASDGDLMEGISHEAASLAGHLGLGKLIVLYDDNDISIDGSTDVTFTEDVGARFEAYGWHVQRVDDGNDLVA
IDAALRQAKAETERPSLIIVRTHIGYGSPNKQDTPAAHGAPLGPDEVRLTKRNLGWPEDKTFYVPEEVYRHMRQAVTRGQ
QWQAEWEALRARYREAYPAEAAELDRWLSRRLPEGWSEGLPTFEAGKAVATRNAGGVVLDVLAARMPELIGGSADLAESN
KTHPKGREAFSRDNRRGGYIHFGVREHAMAAICNGLSLHGLRAYASTFLVFSDYLRPSLRLSALMEQPVIYVFTHDSIGL
GEDGPTHQPIEHLASLCAIPHVVVLRPADATETVEAWKVALEREDGPTVLVLTRQNVPVLDRSRLAPAEGVRRGAYVLRE
AQGTLQAILLASGSEVHVALAAAEQLEAEGIGTRVVSVPSWELFKQQEAAYRESVLPPEVTVRVAVEAGVGQGWEQFVGC
RGRIVSIERFGASAPGKVLFEKFGFTPERVAGEVRALLAQNH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_2641 YP_859417.1 transketolase Not tested Not named Protein 3e-145 53
tktA AAO17218.1 TktA Not tested tcd island Protein 1e-143 50