Gene Information

Name : Rhom172_0371 (Rhom172_0371)
Accession : YP_004824154.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Resistance
Product : protein tyrosine phosphatase
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0394
EC number : -
Position : 420481 - 420906 bp
Length : 426 bp
Strand : +
Note : KEGG: rmr:Rmar_0375 protein-tyrosine phosphatase, low molecular weight; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight

DNA sequence : 
ATGGAAAAGCTGCGCGTTCTGTTTGTCTGCACGCACAATTCGGCCCGCTCGCAGATGGCCGAGGGGCTGCTGCGGGCCAT
GGCCGGCGATCGGTACGAAGTTTACAGTGCCGGGACCGAACCTCGCGGCGTGCATCCGCTGGCCGTGCGCGTCATGCAGG
AGCTCGGCATCGACCTGAGCGGCCACCACTCGGAGCACGTCGATATCTACCGCGACGTGCCCATGGACTACGTGGTGACC
GTGTGCGATTCGGCCCGAGAGCATTGCCCCTACGTACCGGCGCGGCGGCGCAACCTGCATCAGAGCTTTCCCGATCCCTC
GGCCGTCGAAGGGGACGAGGCTGCCCGTCTGGAAGCCTTCCGCCGCGTCCGCGATCAGATCCGCGCCTGGCTCGAGGAGA
CGTTCGTGCGCCAGGCGCCTTTGTAA

Protein sequence : 
MEKLRVLFVCTHNSARSQMAEGLLRAMAGDRYEVYSAGTEPRGVHPLAVRVMQELGIDLSGHHSEHVDIYRDVPMDYVVT
VCDSAREHCPYVPARRRNLHQSFPDPSAVEGDEAARLEAFRRVRDQIRAWLEETFVRQAPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsC YP_252023.1 arsenate reductase Not tested SCCmec Protein 2e-19 42
arsC YP_005754064.1 arsenate reductase Not tested Type-XI SCCmec Protein 2e-18 42
arsC YP_252016.1 arsenate reductase Not tested SCCmec Protein 2e-18 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_0371 YP_004824154.1 protein tyrosine phosphatase BAC0581 Protein 5e-20 44
Rhom172_0371 YP_004824154.1 protein tyrosine phosphatase BAC0580 Protein 3e-19 42
Rhom172_0371 YP_004824154.1 protein tyrosine phosphatase BAC0032 Protein 5e-19 42