Gene Information

Name : Rhom172_2279 (Rhom172_2279)
Accession : YP_004826012.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2610186 - 2611487 bp
Length : 1302 bp
Strand : -
Note : KEGG: rmr:Rmar_2278 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGGAGTGGATAGCCGTCCTGATTCTGGTCGTCTCCTTTGCGGTGCTATTGCTGCTGGGCGTGCCCATCGCGGTCTGCAT
CGGGCTGGCCACGATCCTGACCATGCTGCCGAGCATACCGCTGGCCCCGGCGCTGACCACCGAGGCGCAGCGCATTGCCA
CCGGACTCGATTCGTTCACGCTGCTGGCCATTCCGTTTTTCATTCTGGCCGGGCATCTGATGAACCGGGGCGGCATTGCC
CGGCGACTGGTAAGCTTCGCCGAAGCGGCGCTGGGTATGCTGCCGGGGGCGCTGGCGCACGTGAACATCCTGGCGGCCAT
GCTCTTCGGAGCGATCTCGGGTTCGGCGGCGGCCGTCGCCTCGGCCATCGGCAGCATCATGGCGCCGCACATGGAGCGCG
AGGGTTACGACAAGGGCTACAGCGTGGCGGTCAACGTCACCTCGGCCACCACCGGCCTGCTCATTCCCCCCAGCAACATC
CTGATCGTCTATTCGCTGGCCTCGGGCGGCACATCGATCGCCGCGCTGTTTCTTGCGGGCTACGTTCCGGGCCTTCTTGT
CGGTCTGATGCTTATGCTCGTGGCCGGCTGGATCGCCTGGAAGCGGCGCTACCCGGTGGCCGGTCGGCCCAGCCTCCGCC
GGCTCTGGACCACGTTCTGGGACGCCGCCCCCAGCCTGCTGCTGCTGGTGATCGTGATCGGCGGTATCATCGCGGGCATC
TTCACGGCCACCGAGGCCGCCGCCGTGGCCGTGCTCTACGCGCTGATTCTGGCGCTGCTCTACCGCGAGTTGCGACTGCG
GGATCTACCCCGCGTGCTGCTCGAAGCTTCGTCCACGACCGCCATCGTGCTGCTGCTCATCGCTACCTCGATGGCCATGT
CGTGGATCCTGGCCTACGAGCAGATTCCCCAGGGCGTCAGCCAGGCGTTGCTGGCCCTGACCGACAACAAGATCCTGATT
CTGCTGATCATCAACTTCGTGCTGCTGGCCGTCGGGACGTTCATGGACATGACCCCCGCCGTGCTGATTTTCACCCCGAT
CTTTCTGCCGGTGGCGCTGAACCTGGGCATCGATCCCATTCACTTCGGGATCATCCTGGTGCTTAACCTCTGCATCGGAC
TCTGCACGCCGCCCGTGGGGACCGTGCTGTTCGTGGGACTGGGCGTGACGCAGACGCCCATGACGCGCGTGCTGCGCTCG
CTCTTGCCCATGTATGCCGCGATGATCATTGCACTGCTGCTGGTGACGTACCTGCCGGAGCTGAGCCTCTGGCTGCCTCG
TGTCTTTGGATATGTCGAATAA

Protein sequence : 
MEWIAVLILVVSFAVLLLLGVPIAVCIGLATILTMLPSIPLAPALTTEAQRIATGLDSFTLLAIPFFILAGHLMNRGGIA
RRLVSFAEAALGMLPGALAHVNILAAMLFGAISGSAAAVASAIGSIMAPHMEREGYDKGYSVAVNVTSATTGLLIPPSNI
LIVYSLASGGTSIAALFLAGYVPGLLVGLMLMLVAGWIAWKRRYPVAGRPSLRRLWTTFWDAAPSLLLLVIVIGGIIAGI
FTATEAAAVAVLYALILALLYRELRLRDLPRVLLEASSTTAIVLLLIATSMAMSWILAYEQIPQGVSQALLALTDNKILI
LLIINFVLLAVGTFMDMTPAVLIFTPIFLPVALNLGIDPIHFGIILVLNLCIGLCTPPVGTVLFVGLGVTQTPMTRVLRS
LLPMYAAMIIALLLVTYLPELSLWLPRVFGYVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 1e-30 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-30 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_2279 YP_004826012.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 6e-31 41