Gene Information

Name : Rhom172_2064 (Rhom172_2064)
Accession : YP_004825804.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2353851 - 2354561 bp
Length : 711 bp
Strand : -
Note : KEGG: rmr:Rmar_0818 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver re

DNA sequence : 
ATGGGGAAAGCACGTCTGCTGATCATAGAAGACGACGCGGAAGTACGCGAGGCGCTGGCGCTGTGCCTGGAGACGGCGGG
CTACGAGGTGGACGCCGTCGCCACCGGCGAGGCGGGGCGCGAGAAGGCCATCACGGTGCCCGGCTACGATCTGATCATCC
TGGACGCGAGGCTTCCGGGGCGCGATGGCTTTGAGGTGCTCCGCGAGTTGCGTGAGGAGGACGGGGTAATGACGCCTGTC
CTGATGCTTACCGGGCTGAACGACCGGGAGCACCGCCTGAAGGGCTTTGAGCTGGGCGCCGACGATTACGTGGCCAAGCC
GTTTGCCCCCGAGGAGCTGCTGGCCCGCGTCGAGGCCGTCCTGCGCCGCGCAAAGCGGCGGCCGCAGCCCGAAAAGCGCC
GCTTTCGGGTGGGCGGCATCGAGGTCGATCTGGTGGACGGGACGGTGACGCGTGACGGCCAGCCGGTGCCGCTGACCGAC
ATGGAGTTCCGGCTACTGCGCTACCTGATCCTGCACCACGGCCGTACCGTCACCCGCGAGCAATTGCTCCGGGAGGTCTG
GGAGCTTCCGCCCACCGTGCAGACCCGTACCATCGATCGTCACATCAACGCCCTTCGCAAGATCATGGACGGCGAGGACG
AAGCAAGCTGGCCGATCCAGAGCGTCTACGGGATCGGTTACCGGCTGGTGGGCGGGGAGTTCGTCGATTGA

Protein sequence : 
MGKARLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGFEVLRELREEDGVMTPV
LMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRAKRRPQPEKRRFRVGGIEVDLVDGTVTRDGQPVPLTD
MEFRLLRYLILHHGRTVTREQLLREVWELPPTVQTRTIDRHINALRKIMDGEDEASWPIQSVYGIGYRLVGGEFVD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_2064 YP_004825804.1 winged helix family two component transcriptional regulator BAC0111 Protein 8e-35 43
Rhom172_2064 YP_004825804.1 winged helix family two component transcriptional regulator BAC0197 Protein 1e-29 42
Rhom172_2064 YP_004825804.1 winged helix family two component transcriptional regulator BAC0347 Protein 9e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_2064 YP_004825804.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-26 41