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Name : Rhom172_1461 (Rhom172_1461) Accession : YP_004825222.1 Strain : Rhodothermus marinus SG0.5JP17-172 Genome accession: NC_015966 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 1664443 - 1667655 bp Length : 3213 bp Strand : - Note : TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: rrs:RoseRS_0281 HsdR family t DNA sequence : ATGGCCATGGGTAATCTTGTGGAAGAGGACGTTGAACAAATGGCCCTGGACGAGCTCCAGGCGCTGGGCTGGCAGACCGC ATACGGCCCCGACCTCGCCCCGGAGAGCTTACGGCCGGAACGTGAAACCTACGGCGATGTGGTGCTCAAGGGGCGGTTGC GGGAGGCGCTGGAGCGCATCAATCCGGACAGGCCCGCCGTGGCCATCGAAGAGGCCCTGCGCCAGGTGCTCACGCCCGAG AGTCCGGCGCTCATCGAGAACAACCGCCGCTTCCATCAGATGCTCACCGACGGCGTGGACGTCTCCTGGATGGGGCCAGA GCGCCAGCAGAACGGTAAAGTCTCGCTGATCGACATCCAGAACCTGGACAACAACGACTGGCTGGCAGTCAACCAGTTCA CGGTCATCGAGAACAAGCACGAGCGGCGGCCGGATATTGTGCTCTTCGTCAACGGTCTGCCGCTGGTCGTGATCGAGTTG AAAGACCCGGGCACGGTGCAGGCCACGCTACGGGCGGCCTTCAATCAGTTGCAGACCTACAAGCAGGAGATTCCTTCGCT CTTTACCTACAACGAGATCCTCGTCATTTCCGACGGCATGCAGGCCCGCTTCGGGACGCTGACGTCCGGTTGGGACCGAT TCATGCCCTGGCGCACCATCGACGGGACCGACCTCTACCGCGAGCCGGGAAACGACAAGCAGAGCGAAGGTGTGGTGCAG CCGGGGATGAAGACCCTGATCCGTGGCATGTTCGAGCGTCGGCGCTTTCTCGACTACGTGCTCAACTTCATCACCTTCGA GCAGGTGGACGAGGGCACAGCCGGCATCGCCAAGAAGGCCGCCGGCTATCACCAGTACCATGCCGTCAATCAGGCGCTCG CTTCCACACTCGTCGCCTGTGGCATCGAAGCGGATGCCAGCACGCTATACGCTCGCTTTCAAGAAGCAGAGGCCGCTGAT CCGTTTGCGGTCCGAGAACCAAAAGCCGAATATCGCCCGAAGTTAGGCGACCGGCGCGTCGGGGTCATCTGGCACACGCA AGGATCCGGCAAAAGCCTCTCCATGGTCTTCTACGCCGGCAAGGTGATTCGCCATCCGGCGATGCAGAATCCCACCATCG TCGTTATCACTGACCGAAATGACCTGGACAACCAGCTCTTTGCCACCTTTGCCGCCAACCGCCAGATCCTGCGCCAGACA CCCGTACAGGCCGAAAGTCGTGGCCATTTGCGGGAGCTGTTGAAAGTCGCCGCAGGCGGCGTCATCTTCACCACGATCCA AAAATTCTTTCCGGAAAAGAAGGGCGACACCTACCCGACGCTCTCAGAACGCCATAACATCGTCGTCATTGCCGATGAAG CCCATCGTAGCCAGTATGATTTCATTGATGGCTTCGCCCGGCACATGCGCGATGCGTTGCCCAACGCTTCGTTCATTGGC TTTACCGGGACGCCCATCGAAAAGGACGACCGCAACACCCGGGCCGTCTTCGGCGACTACATTTCTATCTACGATATTCA GCGCGCCGTGGAAGATGGGGCCACCGTGCCCATCTACTACGAAAGCAGGCTGGCCAGAATCGAGCTGGACGAGGCGGAAA AGCCGCGCCTGGACGAAGCCTTCGAGGAGATCACCGAAACCGAAGAAGACGAAGTTCGGCGGGAGCGGTTGAAGAGCAAG TGGGCCTCTCTGGAAGCCCTGGTGGGTGCGGAGAAGCGCATCCGGCTCGTGGCGAAAGACCTGGTGGAGCACTGGGAGCG CCGTCGTGAAGCCATGCTCGGCAAGGGCATGATTGTCTGTATGAGCCGGCGCATCTGTGTGGAGATGTACAGGGCTATCA CCGCGCTTCGGCCCGACTGGCACAGCGACGATGACAACAGGGGCAAGATCAAGGTGGTGATGACAGGTTCGGCGTCCGAT CCGTCGGACTGGCAGCCGCACATTCGCAATAAGCAGCGCCGGGACCTCATCGCCCGCCGCTTCAAGGATCCGGATGACGA ACTGGAGCTCGTGATCGTGCGCGACATGTGGCTCACCGGCTTCGATGCGCCGCCCCTGCACACGATGTACATCGACAAGC CGATGAACGGCCACAATCTGATGCAGGCCATCGCCCGGGTGAACCGCGTCTTTCGCGACAAGCCCGGCGGGCTGGTGGTG GACTACCTGGGCATTGCCGATTCCCTCAAGAAGGCGCTTGCCGTGTACGCTGAAAGCGGCGGTCGGGGCAAGGCGGCCAT TGATCAGGCCGAGGCCGTGGCGGTGATGAAGGAGAAGTACGAGGTCGTCTGCGGCATCCTGCACGGATTCGACTATCGGC GCCTGCTGGCTGCTGCTCCCGATGAGCGCCTGCAGGGCATTGCCGAAGCCATGGACTTCATTCTGGGGCGGGAGGACGGT AAGAAGCGCTATCTGCAGGCCGTGGCGGCGCTGTCTAAGGCGTTTGCTTTGGCGGTGCCGCACGAGGAGGCCCTCGCTAT TCGCGACGAGGTGGGTCTGTTTCAGGAGATCCGGGCAGCTCTGATCAAGGCTACGGTGAGTTCGGCGGAGCGCGCCCCGG AGGAGGTTGAAGCGGCGGTTCGGCAGCTCGTTTCCCGGGCGATCTCGGGCTGCGAGGTGGTGGATATCTTCGCGGCGGCG GGATTGGAAAAGCCCGACATTTCCATTCTTTCCGATGAGTTTCTTGAAGAAGTGCGCAGCTTGCCGCAGAAAAATCTGGC CGTAGAGACGCTGAAAAAACTCCTTCAGGATGAGATCCAGGTTCGCCTGCGCAAAAACGTGGTGCAGTCGCGCGCGTTCT CGGAATTGCTCCAGCGGGCCCTGAACAAGTATCACAATCGCGCCATCGAAGCCGCGCAGGTGATTGAAGAACTGATCGCC ATTGCCAGGCAGGTGCGAGAAGCCACGCGCCGTGGCGAAAAGCTCGGCCTGTCCGAAGATGAAGTGGCGTTTTATGATGC GCTGGCGGCAAATGAAAGCGCTGTAGAAGTGCTCGGAGACGAAACCTTGAAGGAGATCGCTCAGGTACTGGTCGAAAGCG TACGCAAAAGTGTAACGGTAGATTGGAATAGACGCGAGAGCGCCCGCGCCCAGTTGCGCGTACTCGTCAAGCGTATCCTG CGCAAATATGGCTATCCGCCAGACAAACAGGAACAGGCTGTAGAGCTGGTGTTGAGTCAAACAGAGGTGTTGTGTGGCGA GTGGGTTGCTTGA Protein sequence : MAMGNLVEEDVEQMALDELQALGWQTAYGPDLAPESLRPERETYGDVVLKGRLREALERINPDRPAVAIEEALRQVLTPE SPALIENNRRFHQMLTDGVDVSWMGPERQQNGKVSLIDIQNLDNNDWLAVNQFTVIENKHERRPDIVLFVNGLPLVVIEL KDPGTVQATLRAAFNQLQTYKQEIPSLFTYNEILVISDGMQARFGTLTSGWDRFMPWRTIDGTDLYREPGNDKQSEGVVQ PGMKTLIRGMFERRRFLDYVLNFITFEQVDEGTAGIAKKAAGYHQYHAVNQALASTLVACGIEADASTLYARFQEAEAAD PFAVREPKAEYRPKLGDRRVGVIWHTQGSGKSLSMVFYAGKVIRHPAMQNPTIVVITDRNDLDNQLFATFAANRQILRQT PVQAESRGHLRELLKVAAGGVIFTTIQKFFPEKKGDTYPTLSERHNIVVIADEAHRSQYDFIDGFARHMRDALPNASFIG FTGTPIEKDDRNTRAVFGDYISIYDIQRAVEDGATVPIYYESRLARIELDEAEKPRLDEAFEEITETEEDEVRRERLKSK WASLEALVGAEKRIRLVAKDLVEHWERRREAMLGKGMIVCMSRRICVEMYRAITALRPDWHSDDDNRGKIKVVMTGSASD PSDWQPHIRNKQRRDLIARRFKDPDDELELVIVRDMWLTGFDAPPLHTMYIDKPMNGHNLMQAIARVNRVFRDKPGGLVV DYLGIADSLKKALAVYAESGGRGKAAIDQAEAVAVMKEKYEVVCGILHGFDYRRLLAAAPDERLQGIAEAMDFILGREDG KKRYLQAVAALSKAFALAVPHEEALAIRDEVGLFQEIRAALIKATVSSAERAPEEVEAAVRQLVSRAISGCEVVDIFAAA GLEKPDISILSDEFLEEVRSLPQKNLAVETLKKLLQDEIQVRLRKNVVQSRAFSELLQRALNKYHNRAIEAAQVIEELIA IARQVREATRRGEKLGLSEDEVAFYDALAANESAVEVLGDETLKEIAQVLVESVRKSVTVDWNRRESARAQLRVLVKRIL RKYGYPPDKQEQAVELVLSQTEVLCGEWVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 49 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 46 |
