Gene Information

Name : Rhom172_1321 (Rhom172_1321)
Accession : YP_004825085.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Virulence
Product : phosphonate-transporting ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : 3.6.3.28
Position : 1521071 - 1521814 bp
Length : 744 bp
Strand : -
Note : PFAM: ABC transporter-like; KEGG: rmr:Rmar_1277 ABC transporter related protein; SMART: ATPase, AAA+ type, core

DNA sequence :
ATGAAATGGGCCATTGAAATCGAAGACCTGACCGTTGCCTACCAGCAGCAGCCGGTGCTCTGGGACGTGGACGCGGCGAT
TCCGACCGGCCAGATGACGGCGATCGTCGGACCCAACGGCGCCGGCAAGAGCACGCTGCTCAAGGCCGTACTGGGCATTG
TGCGACCGGCCGCCGGACGCATCCGCGTGCTGGGCCGGCCGTTTCGCGCCCGGGAACGCCGGGTGGCTTATGTGCCCCAG
CGGGCCGAGCTGGACTGGAACTTCCCGGCGACCGTGTTCGACGTGGCACTGATGGGCACCTACGGGCGTGTGGGCTGGTT
GCGTCGTCCCGGCGCGGCCGAACGCACACGGGCGCGTGCGGCGCTCGAGCGCGTCGGGATGGCCGAGCTGGCAGACCGAC
CGATCGGACAGCTTTCCGGGGGCCAGCAGCAGCGCGTGCTGCTGGCCCGCGCGCTGGCTCAGGAAGCGGAGCTTTACCTG
CTCGACGAGCCGTTTCAGGGGGTGGACGCCCCTACCGAGGCCACGCTGCTTGAGGTGCTGCGCTGGCTCAAGCAGCAGGG
CAAAACCATCGTGGTGGTGCACCACGACCTGTCCACCGTGGCCGAATACTTCGACTGGGTGATATTGCTGAACGTCCAGT
GCATCGCCTGCGGGCCGGTGGCCGAAGCCTTCACTCCTGAAAATCTGCGGCGCACCTACGGCGGCCGCATGGTGGTTCCG
GCCCCGACGGTGAATCCGGCATAG

Protein sequence :
MKWAIEIEDLTVAYQQQPVLWDVDAAIPTGQMTAIVGPNGAGKSTLLKAVLGIVRPAAGRIRVLGRPFRARERRVAYVPQ
RAELDWNFPATVFDVALMGTYGRVGWLRRPGAAERTRARAALERVGMAELADRPIGQLSGGQQQRVLLARALAQEAELYL
LDEPFQGVDAPTEATLLEVLRWLKQQGKTIVVVHHDLSTVAEYFDWVILLNVQCIACGPVAEAFTPENLRRTYGGRMVVP
APTVNPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 6e-34 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 5e-34 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-36 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-36 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-37 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-37 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-37 45
phuC YP_005686351.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 8e-17 41
phuC YP_005682167.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 7e-17 41
phuC YP_005684259.1 Iron(III) dicitrate transport permease-like protein yusV Virulence PiCp 7 Protein 7e-17 41
unnamed CAD33755.1 putative ABC transporter ATP-binding protein Virulence PAI I 536 Protein 5e-25 41
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 8e-17 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_1321 YP_004825085.1 phosphonate-transporting ATPase BAC0400 Protein 1e-58 63
Rhom172_1321 YP_004825085.1 phosphonate-transporting ATPase BAC0350 Protein 1e-37 45
Rhom172_1321 YP_004825085.1 phosphonate-transporting ATPase BAC0440 Protein 4e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_1321 YP_004825085.1 phosphonate-transporting ATPase VFG0526 Protein 9e-38 45
Rhom172_1321 YP_004825085.1 phosphonate-transporting ATPase VFG1496 Protein 3e-25 41