Gene Information

Name : Rhom172_1119 (Rhom172_1119)
Accession : YP_004824885.1
Strain : Rhodothermus marinus SG0.5JP17-172
Genome accession: NC_015966
Putative virulence/resistance : Resistance
Product : Cys/Met metabolism pyridoxal-phosphate-dependent protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 1292480 - 1293640 bp
Length : 1161 bp
Strand : -
Note : PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: rmr:Rmar_1667 cystathionine gamma-synthase

DNA sequence :
ATGCAGCCACAGACGCGTCTGACGCTGGCCGGTCAGCAGACCGATTCCAGCTACAACAGCATCGTCCCTCCCATTTACCA
GTGCGCCACGTTCCGCTTCGAGGATGTCGGGTTGACGAAGGGATACGACTATTCGCGCAGCGGCAACCCGACGCGGCGTG
CGCTGGAAGAGGTGCTGGCCGACCTGGAGGGCGGCGCCGACGCCGTGGCCACCACCAGCGGCATGGCGGCCGTTTCGACG
GTGCTGGCCCTGTTCGACCACGGCATCCATGTGATCTGTGCCCACGACTGCTACGGCGGCACCGAGCGGCTGCTGAGCCT
GCTGGCGCGACAGGGCAAGCTGGAGGTGTCGTTCGTCGACCTGCGCGACCTGCAGGCCGTCGAGGCGGCCATCCGCCCGA
ACACCCGGCTCATCTGGGTGGAAACGCCCTCCAACCCGCTGCTGCGCATCGTCGATCTGGATGCACTCTGTCGCTTCGCG
AAAGCCCACGACCTGCTGGTGGTGGTGGACAATACCTTCCTGTCGCCGCTGCAGCAGCGGCCCATGGACTTCGGCGCCGA
CATCGTCGTCTATTCGACCACGAAGTACCTGAACGGCCACTCCGACGTCATCGGCGGGGCGGTCATCGTCCGCACCGGGG
AATTGAACGAGCAGTTGCAGTTTGTGGCGAACGCCCACGGCACCATCGCCGGTCCCTTCGACTGCTGGCTCGTACTGCGC
GGGCTGAAGACGCTTCCGGTGCGCATTCGCCAGCATGAGCACAACGCCATGGCCGTGGCGCGCTTCCTGGCGCAGCATCC
CAACGTCGAGCGCGTGTTCTATCCCGGATTGCCCTCGCATGAAGGCCACGAGATCGCGGCGCGCCAGCAGAAAGGGTTCG
GCGGCATGGTTTCGTTCACGGTCAAAGGGGGCCTGGAGGCCGTCCACCACATTCTGCGATCCACGCGCGTCTTCACGCTG
GCCGAATCGCTGGGCGGCGTCGAGTCGCTCATCGAGCATCCGGCCACGATGAGCCATGCGTCGATGCGCCCGGAACAACG
CGAGGCCGCCGGCATTACGGACAACCTGATCCGCCTGTCGGTCGGCATCGAGGCCACCGACGACCTGATCGCCGACCTGG
AACAGGCGCTGGCCTACGAACCGGCCACCGTTGCCGCCTGA

Protein sequence :
MQPQTRLTLAGQQTDSSYNSIVPPIYQCATFRFEDVGLTKGYDYSRSGNPTRRALEEVLADLEGGADAVATTSGMAAVST
VLALFDHGIHVICAHDCYGGTERLLSLLARQGKLEVSFVDLRDLQAVEAAIRPNTRLIWVETPSNPLLRIVDLDALCRFA
KAHDLLVVVDNTFLSPLQQRPMDFGADIVVYSTTKYLNGHSDVIGGAVIVRTGELNEQLQFVANAHGTIAGPFDCWLVLR
GLKTLPVRIRQHEHNAMAVARFLAQHPNVERVFYPGLPSHEGHEIAARQQKGFGGMVSFTVKGGLEAVHHILRSTRVFTL
AESLGGVESLIEHPATMSHASMRPEQREAAGITDNLIRLSVGIEATDDLIADLEQALAYEPATVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 6e-65 47
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-79 46
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-80 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rhom172_1119 YP_004824885.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein BAC0207 Protein 3e-57 42