Gene Information

Name : PARA_00440 (PARA_00440)
Accession : YP_004821745.1
Strain : Haemophilus parainfluenzae T3T1
Genome accession: NC_015964
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 37890 - 38723 bp
Length : 834 bp
Strand : +
Note : -

DNA sequence :
ATGAGTGAAATATTTGCGATTTTCCTTGAGCCATTTCAGTTTGACTTTATGCAAAATGCGTTACTCACCGCATTAGTGGT
TGCTGTGATCTGTGCACTACTCTCTTGCTATTTGGTATTGAAAGGATGGTCATTGATGGGCGATGCTATTTCCCATGCCG
TCCTGCCTGGTATTGTATTAGCTTTTCTAGCCGGTATTCCATTGGTGATTGGAGCCTTTGTCTCAGGTATTGCCTGTGCC
TTAGGAGTGGGTTATTTAAAAGAAAACAGTCGTATTAAAGAAGATACCGCGATGGGGATTGTATTTTCGGGAATGTTTGC
CATTGGTTTGGTGCTGTTCACTAAAATCCAAACCTCACAACATCTCACACACATCTTATTCGGTAACGTATTAGGTGTAA
GCCGACAAGAGCTGATTCAAACGGCTATCATCGCCTTGATTATTTTTATTTTGCTTGGATTAAAGCGTCGTGATTTTCTA
CTTTATTGCTTTGATCCGAGCCATGCCCGTGTTGCAGGTCTTTCGCCTAAATTATTGCATTATGGCTTACTCACATTACT
CGCCCTCACCATTGTGAGTTCAATGCAAGTCGTTGGGGTGATTTTGGTTGTAGCCATGCTAATTGCACCAGGCATCACTG
CGCTAACACTGACCAATCGCTTCGATAAGATGCTTGTTATCGCGATTATCAGCGCTGTAACTGCAAGTCTATTAGGCGTG
CTACTTAGTTATCATTTTGATGCATCTACTGGTGCATGCATTATTTTGTTACAGGCTGTATTTTTCTTAATTGCGCTAAT
TTATAGCAAATTAAAAGTGCGATTAAATTTTTAA

Protein sequence :
MSEIFAIFLEPFQFDFMQNALLTALVVAVICALLSCYLVLKGWSLMGDAISHAVLPGIVLAFLAGIPLVIGAFVSGIACA
LGVGYLKENSRIKEDTAMGIVFSGMFAIGLVLFTKIQTSQHLTHILFGNVLGVSRQELIQTAIIALIIFILLGLKRRDFL
LYCFDPSHARVAGLSPKLLHYGLLTLLALTIVSSMQVVGVILVVAMLIAPGITALTLTNRFDKMLVIAIISAVTASLLGV
LLSYHFDASTGACIILLQAVFFLIALIYSKLKVRLNF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-60 55
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-60 55
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-60 55
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-60 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-60 54
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 6e-36 41
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 8e-36 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-43 41
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 5e-43 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-43 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-43 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 7e-43 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PARA_00440 YP_004821745.1 hypothetical protein BAC0442 Protein 3e-77 67
PARA_00440 YP_004821745.1 hypothetical protein BAC0352 Protein 2e-60 55
PARA_00440 YP_004821745.1 hypothetical protein BAC0441 Protein 4e-39 42
PARA_00440 YP_004821745.1 hypothetical protein BAC0351 Protein 3e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PARA_00440 YP_004821745.1 hypothetical protein VFG0528 Protein 2e-60 55
PARA_00440 YP_004821745.1 hypothetical protein VFG0527 Protein 3e-43 41