Gene Information

Name : Strvi_8739 (Strvi_8739)
Accession : YP_004818323.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 10087077 - 10087889 bp
Length : 813 bp
Strand : +
Note : KEGG: sgr:SGR_3181 iron-siderophore ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence : 
GTGGAACCCGCTGCCCCGAACCGGCTCACCGCGCGTGAGCTGACCCTGGCGTACGAGGACCGGACCGTCGTGGACGGGCT
GGACCTGGCGATACCCGACGGCGAGGTCACGGTCATCGTCGGCCCCAACGCCTGCGGCAAGTCCACCCTGCTGCGCGCCC
TCGGGCGGCTGCTGCGGCCGCGCGGCGGCGCCGTGCTCCTCGACGGCACGGATCTCGCCCGTATCCCCACCAAGAAGATC
GCCCGGGCCGTGGGGCTGCTCCCGCAGACCCCGGTCGCGCCCGAGGCGATCACCGTCGCCGATCTCGTCTCCCGCGGCCG
CCAACCGCATCAGCACTGGTGGCAGCAGTGGTCGGAGGAGGACGAACGAGCCGTCACGGACGCCATGGAGCGTACGGACG
TGACGGCGCTCGCCGACCGCCCGGTGGACGAGCTGTCCGGCGGGCAGCGGCAGCGCGTATGGATCGCGATGGCGCTCGCG
CAGGAGACCGATCTGCTGCTGCTGGACGAGCCCACGACGTATCTGGACATCTCCCATCAGGTGGAGGTGCTGGACCTGGT
GCGCCAGCTCAACCACGAACGCGGCCGTACGGTCGTCGCCGTCCTGCACGACCTCAACCAGGCCGCCCGCTACGCCGATC
ATCTGATCGCGATGAAGGAGGGCCGGATCGTGGCGCGCGGCGGCCCGGCGGAGATCGTCACGGCGGAGCTGGTGCACGAG
GTGTTCGGCCTGGACTCGGTGGTCGTCCCCGATCCGGTCACCGGCAGCCCCCTCGTCGTCCCGGGCACGCCTTGGCAGGC
CGAGCAGGGCTGA

Protein sequence : 
MEPAAPNRLTARELTLAYEDRTVVDGLDLAIPDGEVTVIVGPNACGKSTLLRALGRLLRPRGGAVLLDGTDLARIPTKKI
ARAVGLLPQTPVAPEAITVADLVSRGRQPHQHWWQQWSEEDERAVTDAMERTDVTALADRPVDELSGGQRQRVWIAMALA
QETDLLLLDEPTTYLDISHQVEVLDLVRQLNHERGRTVVAVLHDLNQAARYADHLIAMKEGRIVARGGPAEIVTAELVHE
VFGLDSVVVPDPVTGSPLVVPGTPWQAEQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-59 55
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-51 53
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-51 53
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-51 51
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-51 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-49 48
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-49 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-43 47
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 1e-27 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 5e-37 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-42 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-42 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-42 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_8739 YP_004818323.1 ABC transporter BAC0164 Protein 1e-43 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_8739 YP_004818323.1 ABC transporter VFG0925 Protein 7e-58 59
Strvi_8739 YP_004818323.1 ABC transporter VFG1042 Protein 1e-43 47