Gene Information

Name : Strvi_6870 (Strvi_6870)
Accession : YP_004816526.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4779
EC number : -
Position : 7872985 - 7874049 bp
Length : 1065 bp
Strand : -
Note : PFAM: Bacterial transport system permease; KEGG: sma:SAV_6492 ferrichrome ABC transport system permease

DNA sequence :
GTGAACGCCAGCAAGCGCACCAGCAAGCGCGGGACGCGCGGGGTCACACTGCGCACCGCCGGCCTCTCGCTGCGCCTGGA
CGTGCGTGGCGCGGTCGTGGGGCTGCTGCTGCTCGTCGTGGCGCTGGCGATGAGCGTGGTCCTGATCGGCACCGGCGACT
TCCCCCTCGCCCCCGCCGATGTCCTGCGCACCCTGGCCGGAAACGGCACCGTGGCCCAGGACTTCATCGTCAACGAACTG
CGGCTGCCGCGGATCCTGGTGGGGCTGCTGGTCGGTGCGGCCCTCGGGGTGGCCGGGGCGATCTTCCAGTCCATCTCCCG
CAACCCGCTGGGCAGTCCGGACGTGATCGGCCTCGGCCAGGGGTCTGCGGCCGGGGCGCTCACCGTGATCGTCCTCCTCC
AGGGCGATCCGACCGAGGTCGCCATCGGCGCGCTCGGCGGCGGCCTGCTGACCGGGTTCGCGGTCTACACGCTGGCCTGG
CGGCGCGGCGTGCACGGATACCGGCTGGTGCTGGTGGGCATCGGCACGTCCGCGATGCTCACCGCCGTCAACGGCTATCT
GCTCACCAGGGCCGACATCCTGGACGCGACCCGCGCGGTGGTGTGGATCGCCGGATCGCTCAACGGGCGGGACTGGGCCC
AGGTGTGGCCGCTGGCGTGCGGCTGCGCGGTGCTCCTGCCCGTCGTCCTCGGGCAGGCGCGGAACCTGCGGATGCTGGAG
ATGGGTGACGACAGCGCGTACGCCCTCGGGGTGCGGGTCGAGCGCACCCGGCTGGTGCTCATGTTCACGGCCGTCGTGTT
CACCGCCGCCGCCACGGCCGCCGCCGGGCCCGTCGCCTTCGTGGCGCTCGTCGCCCCGCAGCTCGCCCGCAGGCTCACCC
GCTCGTCCGGGCCCAACCTGCTCCCCGCGGCCTGGATGGGCGCGGCCCTGCTGGTCACCGCCGACTGGGCGGCCCAGCGG
GCCTTCGGTGCCGACCAGCTTCCGGTCGGAGTGCTGACGGGGATGCTGGGCGGGGCCTATCTGCTGTGGCTGCTGGTGAC
TGAGCGCAGGGAGGGGCGGATATGA

Protein sequence :
MNASKRTSKRGTRGVTLRTAGLSLRLDVRGAVVGLLLLVVALAMSVVLIGTGDFPLAPADVLRTLAGNGTVAQDFIVNEL
RLPRILVGLLVGAALGVAGAIFQSISRNPLGSPDVIGLGQGSAAGALTVIVLLQGDPTEVAIGALGGGLLTGFAVYTLAW
RRGVHGYRLVLVGIGTSAMLTAVNGYLLTRADILDATRAVVWIAGSLNGRDWAQVWPLACGCAVLLPVVLGQARNLRMLE
MGDDSAYALGVRVERTRLVLMFTAVVFTAAATAAAGPVAFVALVAPQLARRLTRSSGPNLLPAAWMGAALLVTADWAAQR
AFGADQLPVGVLTGMLGGAYLLWLLVTERREGRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusC YP_005143744.1 iron ABC transporter permease Virulence Not named Protein 1e-27 45
fagB YP_005680308.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 5e-27 45
fagB YP_005682398.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 3e-27 45
fagB YP_003782431.1 integral membrane protein Not tested PiCp 1 Protein 3e-27 45
fagB YP_005684489.1 Iron-enterobactin transporter Virulence PiCp 1 Protein 3e-27 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_6870 YP_004816526.1 ABC transporter permease VFG0928 Protein 8e-32 50