Gene Information

Name : Strvi_6869 (Strvi_6869)
Accession : YP_004816525.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 7871968 - 7872894 bp
Length : 927 bp
Strand : -
Note : KEGG: sma:SAV_6493 iron-siderophore uptake system ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGGACAAGGACACCCGGCAGGCCGTGGCCGACGGCGGCAGCGGGAGTGACGGCGGGAGCGACAGCGGGCGCGGCAGCGC
TGAGGGGCGGCAGCGGCTCATGGCGGAGGGGCTGACCCTCGCCTACGACCGGCGCACCGTCGCCGAGAAGCTGTCCGTGA
CCATCCCCGACCACTCCTTCACGGTGATCGTCGGGCCGAACGCCTGCGGCAAGTCGACCCTGCTGCGCGCCCTGTCCCGG
ATGCTCAAGCCGGTGGCCGGATCGGTGCTGCTGGACGGGCAGGCGATCGGCACGATGCCCGCCAAGAAGGTCGCCCGCAC
GCTCGGGCTGCTGCCCCAGTCCTCGATCGCCCCGGACGGGATCACCGTCGCCGATCTGGTCGCCCGCGGCCGCTATCCCC
ACCAGGGGCTGCTGCGGCAGTGGTCGGAGGCGGACGAGCGGATCGTCGACGAATCGATGGCGGCGACCGGGGTGGCGGAG
CTCGCGGATCGTTATGTCGACGAATTGTCCGGCGGTCAGCGTCAGCGGGTATGGATCGCGATGGCCATCGCCCAGCAGAC
CCCGCTGCTGCTCCTCGACGAGCCCACGACCTATCTGGACATCCAGCACCAGATCGATGTGCTGGACCTGTGCGCCCAGC
TCCACGAGGAGCAGGGCCGTACCCTCGTCGCCGTTCTGCACGACCTGAACCACGCCGCCCGCTACGCCACCCATCTGATC
GCGATGCGGGGCGGCGAGATCGTCGCCGAGGGGGCGCCGGGGGACGTGGTCACGGCGGAGCAGGTGGAGCGGGTCTTCGG
GTTGCCGTGCCAGGTGATCGACGACCCGGAGACGGGGACGCCGCTGGTCATCCCGGCCGCCCGCCGGTCCCGTACGGCAC
GGGTCGAGGCGCCTACGCCGCTGGCGGGTTTCGTGAGCGAGTCCTGA

Protein sequence : 
MDKDTRQAVADGGSGSDGGSDSGRGSAEGRQRLMAEGLTLAYDRRTVAEKLSVTIPDHSFTVIVGPNACGKSTLLRALSR
MLKPVAGSVLLDGQAIGTMPAKKVARTLGLLPQSSIAPDGITVADLVARGRYPHQGLLRQWSEADERIVDESMAATGVAE
LADRYVDELSGGQRQRVWIAMAIAQQTPLLLLDEPTTYLDIQHQIDVLDLCAQLHEEQGRTLVAVLHDLNHAARYATHLI
AMRGGEIVAEGAPGDVVTAEQVERVFGLPCQVIDDPETGTPLVIPAARRSRTARVEAPTPLAGFVSES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-64 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-64 52
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-64 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-64 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-63 51
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-60 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-60 47
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-50 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-50 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-50 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-50 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_6869 YP_004816525.1 ABC transporter BAC0164 Protein 2e-50 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_6869 YP_004816525.1 ABC transporter VFG0925 Protein 1e-76 59
Strvi_6869 YP_004816525.1 ABC transporter VFG1042 Protein 2e-50 45