Gene Information

Name : Strvi_6380 (Strvi_6380)
Accession : YP_004816111.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Unknown
Product : transposase IS3/IS911 family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 7285741 - 7286049 bp
Length : 309 bp
Strand : +
Note : PFAM: Transposase IS3/IS911; KEGG: scb:SCAB_0831 transposase

DNA sequence :
ATGCCTGCCCCGAGGAAATACCCGCTGGAGTTGCGTGACCGCGCGGTCCGCATGTGTCGCGCCGCCGAGCCGAAGCCCGT
CATCCGCCGTATGGCAGAGGAACTCGGGGTGCATCACGAGGCTCTGCGCAACTGGATCCGTCAGGCCGAGGCTGATGCCG
GTGAGCGAGGCGACATTCTCACCACCGCCGAGCGTGAGGAGCTGGCTGCTCTGCGGAAGGAGAATGCCCAGCTCAAGCGG
GCGAACGAGGTCCTGCGGACGGCCTCAGCTTTTTTCGCGGCCCAGCTCGACCCGACCCGGCCCAGGTGA

Protein sequence :
MPAPRKYPLELRDRAVRMCRAAEPKPVIRRMAEELGVHHEALRNWIRQAEADAGERGDILTTAEREELAALRKENAQLKR
ANEVLRTASAFFAAQLDPTRPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF_36 AAZ04445.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 0.003 43
APECO1_3498 YP_854313.1 transposase; OrfA protein of insertion sequence IS629 Not tested PAI I APEC-O1 Protein 0.004 43
c3596 NP_755471.1 hypothetical protein Not tested PAI I CFT073 Protein 5e-05 42
r13 AAC61722.1 R13 Not tested PAI I CFT073 Protein 4e-05 42
c5177 NP_757025.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-05 42
unnamed AAL67404.1 R13-like protein Not tested PAI II CFT073 Protein 4e-05 42
ECUMN_3344 YP_002414020.1 transposase ORF A, IS629 Not tested Not named Protein 5e-05 42
CDC7B_2036 YP_005163477.1 hypothetical protein Not tested Not named Protein 2e-06 41
CDCE8392_1959 YP_005134490.1 hypothetical protein Not tested Not named Protein 1e-06 41
S3184 NP_838467.1 IS629 orfA Not tested SHI-1 Protein 5e-05 41
unnamed CAD42084.1 hypothetical protein Not tested PAI II 536 Protein 5e-04 41
SF2979 NP_708753.1 IS629 ORF1 Not tested SHI-1 Protein 5e-05 41
unnamed AAF09023.1 unknown Not tested SHI-O Protein 5e-05 41
tnpE AAD44738.1 TnpE Not tested SHI-2 Protein 5e-05 41
Z1199 NP_286734.1 hypothetical protein Not tested TAI Protein 2e-06 41
Z1222 NP_286757.1 hypothetical protein Not tested TAI Protein 2e-06 41
Z1639 NP_287142.1 hypothetical protein Not tested TAI Protein 2e-06 41
unnamed AAL67399.1 TnpE-like protein Not tested PAI II CFT073 Protein 3e-05 41
Z1661 NP_287163.1 hypothetical protein Not tested TAI Protein 2e-06 41
c5168 NP_757016.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-05 41
unnamed ADD91740.1 hypothetical protein Not tested PAI-I AL862 Protein 3e-05 41
c5214 NP_757062.1 hypothetical protein Not tested PAI II CFT073 Protein 5e-05 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_6380 YP_004816111.1 transposase IS3/IS911 family protein VFG1717 Protein 1e-05 42
Strvi_6380 YP_004816111.1 transposase IS3/IS911 family protein VFG1603 Protein 2e-04 41
Strvi_6380 YP_004816111.1 transposase IS3/IS911 family protein VFG0643 Protein 1e-05 41