Gene Information

Name : Strvi_5463 (Strvi_5463)
Accession : YP_004815266.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 6235427 - 6236308 bp
Length : 882 bp
Strand : -
Note : KEGG: scb:SCAB_90031 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGTTCGGGGGATCCGCCGGCGGGTGGCTGAGCGGGAGGCTCATGGACGTCGCCATCAGCGGCGACACCCTCTGCCACGA
GGGGCAATCCACCGAGCGTCCACCGAGGATCGGCATGCACGCAAACCTGCCCCCTTCCGCCCCGGAGATCTACGCGGCCC
ACGCCACCGACCTGACGAAGGTGTACGGCACGGGGGACACCCGTGTGGTGGCCCTCGACACGGTCACGGTCGGCTTCGTC
CGGAGCCAGTTCACCGCGATCATGGGTCCCTCAGGGTCGGGGAAGTCCACCCTGATGCACTGCGTGGCCGGGCTCGACTC
GCTGTCCTTCGGATCGGTCCGCCTCGGCGACACGGAGATCGGCTCCCTGAACGACCGTCAGCTCACCCGGCTGCGCCGCG
ACCGCATCGGCTTCGTGTTCCAGGCGTTCAACCTGCTGCCCACCCTGAGCGCCGTGGAGAACATCACCCTCCCCATGGAC
ATCGCGGGTCGCAAGCCGGAACAGGCCTGGCTGGAGAGCATCATCCGGACCGTCGGCCTGGCCGACCGGCTCGACCACCG
GCCCGGCCAGCTCTCCGGCGGCCAGCAGCAGCGCGTCGCCGTCGCCCGCGCGCTGGCCGGGCGGCCCGACATCGTCTTCG
CCGACGAGCCCACCGGCAACCTGGACTCCCGCAGCGGGGCCGAGATCCTCGAGTTCCTGCGCGGCTCCACGAGCGCGCTG
GGCCAGACCGTCGTCATGGTCACCCACGACCCCGTCGCCGCCTCCTACGCGGACCGTGTCGTCTTCCTCGCCGACGGGCG
CATCGTCGACGAACTCCACGCGCCCACCGCCGAGGCCGTCCTGGAGCGCATGGGACACCTGACGCCCGCGCAACGGGCCT
GA

Protein sequence : 
MFGGSAGGWLSGRLMDVAISGDTLCHEGQSTERPPRIGMHANLPPSAPEIYAAHATDLTKVYGTGDTRVVALDTVTVGFV
RSQFTAIMGPSGSGKSTLMHCVAGLDSLSFGSVRLGDTEIGSLNDRQLTRLRRDRIGFVFQAFNLLPTLSAVENITLPMD
IAGRKPEQAWLESIIRTVGLADRLDHRPGQLSGGQQQRVAVARALAGRPDIVFADEPTGNLDSRSGAEILEFLRGSTSAL
GQTVVMVTHDPVAASYADRVVFLADGRIVDELHAPTAEAVLERMGHLTPAQRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-32 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-32 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-29 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_5463 YP_004815266.1 ABC transporter CP001581.1.gene598.p Protein 2e-39 44
Strvi_5463 YP_004815266.1 ABC transporter NC_008702.1.4606598. Protein 6e-32 43
Strvi_5463 YP_004815266.1 ABC transporter CP001581.1.gene798.p Protein 1e-31 43
Strvi_5463 YP_004815266.1 ABC transporter NC_012469.1.7686878. Protein 4e-33 43