Gene Information

Name : Strvi_5037 (Strvi_5037)
Accession : YP_004814857.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1116
EC number : -
Position : 5591247 - 5592023 bp
Length : 777 bp
Strand : -
Note : KEGG: tcu:Tcur_1802 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence :
ATGCTGCGGATCGACCACCTCAGCCACCGCTACGGCGACGGCCCCGATGTGCTCCAGGACATCGAACTCACCGTCCCCGA
CGGGCAGTTGCTCACCCTCGTCGGCCCCTCCGGCTGCGGCAAGTCCACCCTGCTGCGCTGTGTCGCGGGCCTCGTCCGCC
CCTCCGCCGGGCGGATCACCCTGGACGGGGAGGTGGTGGACGGCGTCCCGGACCGGCTCGGTGTCGTCTTCCAGGACTAC
AGCCGCTCCCTCTTCCCCTGGCTTACGGTGCGGGAGAACGTGGCCCTTCCGCTGCGGCGGCGCGGGCTGCCCCGCGCGGA
GCGCCATGCGGCGGCGGTGGCCATGCTGGAGCGGGTGGGCCTGGCCGACGCCGCCCGCCGCCACCCCTGGCAGCTTTCGG
GCGGAATGCAGCAGCGCGTCGCCCTCGCCCGCGCCCTGGCCGCCCGGCCCGCGCTGCTGCTGATGGACGAGCCGTTCGGC
GCGCTGGACGCCCAGACGCGGGAGGACCTGGAGGATCTGCTGCTGCGATTGCACCGGGCCCAGGGGATGACGACTGTGCT
GGTCACCCATGACATCGACGAAAGTGTCTATGTGGCGGACCGGGTGGTGGTGCTGGCTCCGGGGCCGGGCCGGGTGCGGG
CGGATCTGCCGGTGGCGCTGCCCGCCGACCGCGACCAGATCGCCACCCGGGGGCTGCCCGGGTTCATCGCGCTGCGGACG
GAGGTGGGGCGCGCGGTGCGCCAGGGAGCGGCCACGCCCCCACCTCGTCCCCTCTGA

Protein sequence :
MLRIDHLSHRYGDGPDVLQDIELTVPDGQLLTLVGPSGCGKSTLLRCVAGLVRPSAGRITLDGEVVDGVPDRLGVVFQDY
SRSLFPWLTVRENVALPLRRRGLPRAERHAAAVAMLERVGLADAARRHPWQLSGGMQQRVALARALAARPALLLMDEPFG
ALDAQTREDLEDLLLRLHRAQGMTTVLVTHDIDESVYVADRVVVLAPGPGRVRADLPVALPADRDQIATRGLPGFIALRT
EVGRAVRQGAATPPPRPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 2e-26 45
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 8e-17 43
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 3e-18 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-16 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-16 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_5037 YP_004814857.1 ABC transporter NC_008702.1.4606598. Protein 2e-08 44