Gene Information

Name : Strvi_3950 (Strvi_3950)
Accession : YP_004813889.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4212014 - 4214737 bp
Length : 2724 bp
Strand : +
Note : KEGG: sco:SCO6408 Clp protease ATP binding subunit; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core

DNA sequence :
ATGGGCAGCGGGAATGGGGGCCCTGATCAAGGCCCCGAGGACTTCGGGCCGGATCCACTCGGCGACTTCCTCGCACGCTT
CCTCGGGACCGGGCCAGCCGGGCAGCGGCCCGATTCACGACATGTCGACTTCGGCCGGCTGATGAGTGAGAACGCGCGGC
ATCTTGTCTCGGCCGCCGCCTCCTACGCCGCCGAACACGGCAGCACCGACCTCGACACCGAACATCTGCTGCGGGCCGCG
CTCTCCTCCGAGCCCACCCGGACCATGGTCTCGCGTGCCGGAGCCGACCCCGACCGGATCGCCGCGGAGATCGACCGCGA
GGCGGGGGGCGGCCCGCCGCGCAACTCGGTCGCCGTCACCCCGGCCGTCAAGCGGGCGTTGCTCGACGCCCATGAGATAG
CCCGCTCACGAGGCTCCTCGTACATCGGCCCCGAACACGTACTGATCGCGCTCGCCGCCAACCGCGAGTCCACCGCCGGG
CAGATCCTCAATGCCGCCCGCTTCGAACCCCGGGCCCCCGGTCCGCCCCAGACCGGCGGCCTCACGCCGAGCGCCCCCAC
CACCGATCAGCGGCCCGTCGTGGACCAGCGGAAGACCCCGAACCTCGACCGGTTCGGCCGCGATCTGACCGAACTGGCCC
GCGAGGGGCGGATCGACCCGGTGATCGGCCGCGATGAGGAGATCGAGCAGAGCATCGAGGTGCTCGCGCGGCGCGGCAAG
AACAACCCCGTGCTCATCGGCGAGGCCGGTGTCGGCAAGACGGCCGTCGTCGAGGGGCTCGCCCAGCGGATCACCGACGC
CGATGTGCCGGACATCCTGCTCGGCCGCCGGGTCGTCCAGCTCGACATCGCGAGCGTCGTGGCGGGCACCCGCTTCCGCG
GCGACTTCGAGCAGCGGGTCACCGGCATCGTCGATGAGATCCGCGCCAACTCCGACGAGTTGATCATCTTCATCGATGAG
CTGCACACGGTTGTCGGCGCCGGCGGCGGTGGCTCCGAGGGCGGCCAGATGGACGCGAGCAATCTCCTCAAGCCGGCACT
GGCCCGCGGCGAACTGCATGTGATGGGCGCGACCACGCTCCGGGAGTACCGCCAGTACATCGAGAAGGACGCCGCGCTCG
CCCGCCGCTTCCAGCCCATCATGGTCCCCGAGCCCACCCCCGCGGACGCCGTCGCCATCCTGCACGGTCTCCGGGACCGC
TACGAGGCCCATCACCAGGTCCGCTACACCGACGAGGCGCTGCTCGCCGCCGTCGAGCTCTCCGACCGCTATCTGACCGA
CCGTTTCCTGCCCGACAAGGCCATCGACCTCATGGACCAGGCCGGGGCCCGGGTACGGCTGCGCTCCAGCGGCCGCGGCA
CCGATGTGCGCGCCCTGGAGCGGGAGGTCGAGCAGCTCACCCGGGACAAGGACCAGGCCGTCGCGTCCGAGAGCTACGAA
CGCGCCACCTCCCTGCGGGACCGCATCGCCGAACTGAACACCCGGATCACGGAGGCATCCGGTACGCAGTACCACGGCGG
GCGCGTCGCCGAGGTCACCGTCGAGGACATCGCCGAAATCGTCTCCCGGCAGACCGGAATCCCCGTCGCCAGCCTGACCC
AGGAGGAGCGCGATCGCCTGCTCGGCCTGGAGGAACACCTCCATCGGCGGGTCGTCGGGCAGGAGGAGGCCGTGGCCGCC
GTGGCCGACGCCGTCCTGCGCGCCCGCGCCGGACTCGCCGACCCCAACCGCCCGAGCGGCAGCTTCCTCTTCCTCGGCCC
CACCGGCGTCGGCAAGACGGAACTCGCCCGCGCACTGGCCGAGGCGCTCTTCGGCAGTGAGGACCGCATGGTCCGCCTCG
ACATGAGCGAGTACCAGGAGAAGCACACCGTCAGCCGCCTGGTCGGCGCGCCCCCCGGATACGTCGGGCACGAGGAGGCC
GGGCAGCTCACCGAGGCGGTGCGCCGCCAGCCCTACTCCCTGCTGCTCCTGGACGAGGTGGAGAAGGGACACCCCGATGT
CTTCAACATCCTGCTCCAGGTGCTCGAGGACGGCAGGCTGACGGACGCCCAGGGCCGCACCATCGACTTCAAGAACACCG
TCATCGTGATGACCAGCAACCTCGGCTCGGAAGCCATCACCGGACGCGGCGGCCCCCTGGGCTTCGGCGGCGGTGACGAC
GAGGCCGACGAGGCGGCGCGCCGGGAGCGGGTGCTGCGCCCGCTGCGGGAGCACTTCCGGCCGGAGTTCCTCAACCGCAT
CGACGAGGTCGTCATCTTCCGCCGGCTCGCCGACGACCAGCTCCGGCAGATCGCCGATGTACTGCTGGAGGAGACCCGGC
GCCGGCTGCGCGCCCAGGACGTCAGCGTGGAGTTCACCCCGCCCGCCGTCGAGTGGCTGGCCCGGCACGGACACCAGCCG
GAGTACGGCGCCCGGCCGCTGCGCCGCACCATCCAGCGCGAGGTCGACAATCCGCTCTCCCGGATGCTGCTCAGCGGCAC
GCTGCCGGCCCACAGCCATGTCCGCGTCGATGTGGAGAACGAGAAGCTGGTCTTCCACACACAGGAGGCGGAGCGGACGG
GGCCCCCCGGCCCGCCGGGCCAGGCGGAGCAGGCCGGGGGGCAGGCGGAGCAGTCCGGACGAACGGAGCAGCCCGGACGG
ACGGAGCAGCCCGGACGTACGGAGCAGCCCGGACGAACGGAGCAGTCGGACGAGCCGGGCGGCCCGGCCCGGCCCGAGTG
GTAG

Protein sequence :
MGSGNGGPDQGPEDFGPDPLGDFLARFLGTGPAGQRPDSRHVDFGRLMSENARHLVSAAASYAAEHGSTDLDTEHLLRAA
LSSEPTRTMVSRAGADPDRIAAEIDREAGGGPPRNSVAVTPAVKRALLDAHEIARSRGSSYIGPEHVLIALAANRESTAG
QILNAARFEPRAPGPPQTGGLTPSAPTTDQRPVVDQRKTPNLDRFGRDLTELAREGRIDPVIGRDEEIEQSIEVLARRGK
NNPVLIGEAGVGKTAVVEGLAQRITDADVPDILLGRRVVQLDIASVVAGTRFRGDFEQRVTGIVDEIRANSDELIIFIDE
LHTVVGAGGGGSEGGQMDASNLLKPALARGELHVMGATTLREYRQYIEKDAALARRFQPIMVPEPTPADAVAILHGLRDR
YEAHHQVRYTDEALLAAVELSDRYLTDRFLPDKAIDLMDQAGARVRLRSSGRGTDVRALEREVEQLTRDKDQAVASESYE
RATSLRDRIAELNTRITEASGTQYHGGRVAEVTVEDIAEIVSRQTGIPVASLTQEERDRLLGLEEHLHRRVVGQEEAVAA
VADAVLRARAGLADPNRPSGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQEKHTVSRLVGAPPGYVGHEEA
GQLTEAVRRQPYSLLLLDEVEKGHPDVFNILLQVLEDGRLTDAQGRTIDFKNTVIVMTSNLGSEAITGRGGPLGFGGGDD
EADEAARRERVLRPLREHFRPEFLNRIDEVVIFRRLADDQLRQIADVLLEETRRRLRAQDVSVEFTPPAVEWLARHGHQP
EYGARPLRRTIQREVDNPLSRMLLSGTLPAHSHVRVDVENEKLVFHTQEAERTGPPGPPGQAEQAGGQAEQSGRTEQPGR
TEQPGRTEQPGRTEQSDEPGGPARPEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-146 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_3950 YP_004813889.1 ATPase AAA VFG0079 Protein 7e-169 50