Gene Information

Name : Strvi_3025 (Strvi_3025)
Accession : YP_004813002.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Unknown
Product : pyridoxal biosynthesis lyase pdxS
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0214
EC number : -
Position : 3119101 - 3120021 bp
Length : 921 bp
Strand : +
Note : TIGRFAM: Vitamin B6 biosynthesis protein; HAMAP: Pyridoxal biosynthesis lyase pdxS; KEGG: sma:SAV_6830 pyridoxal biosynthesis lyase PdxS; PFAM: Vitamin B6 biosynthesis protein

DNA sequence : 
GTGTCCATCACGCCCGCCAGCACGCCCAACTCCGACGCCCCCGCGACCGGCACCGCCCGCGTCAAGCGCGGTATGGCCGA
GCAGCTCAAGGGTGGCGTGATCATGGACGTCGTCACCCCCGAGCAGGCCAAGGTCGCCGAGGACGCCGGTGCCGTCGCGG
TCATGGCACTCGAGCGGGTGCCGGCCGACATCCGTAAGGACGGCGGCGTGGCCCGGATGTCCGACCCGGACATGATCGAG
GGCATCATCGGCGCCGTCTCCATCCCGGTCATGGCCAAGTCGCGGATCGGCCACTTCGTCGAGGCGCAGGTGCTGCAGTC
GCTCGGCGTCGACTACATCGACGAGTCCGAGGTCCTCACCCCGGCCGACGAGGTCAACCACAGCGACAAGTGGTCCTTCA
CCACCCCCTTCGTCTGCGGAGCCACCAACCTGGGCGAGGCGTTGCGCCGGATCGCCGAGGGTGCGGCCATGATCCGTTCC
AAGGGCGAGGCCGGCACCGGCAACGTCGTCGAGGCGGTCCGCCACCTGCGCCAGATCAAGGGCGAGATCGCCCGCCTGCG
CGGCCTGGACAACCACGAGCTCTACGCGGCCGCCAAGGAGATCCGGGCCCCGTACGAGCTGGTCGCCGAGATCGCGCAGA
CCGGCAAGCTGCCGGTCGTGCTGTTCTCCGCCGGCGGTGTCGCCACCCCGGCCGACGCCGCGCTGATGCGCCAGCTCGGC
GCCGAGGGCGTCTTCGTGGGCTCCGGCATCTTCAAGTCGGGCGACCCGGCCAAGCGCGCCGCCGCGATCGTGAAGGCCAC
CACCTTCTACGACGACCCCAAGGTCATCGCGGACGCGTCCCGGGACCTCGGCGAGGCCATGGTCGGCATCAACTGCGACA
CCCTCCCCGAGTCCGAGCGCTACGCCAGCCGCGGCTGGTAA

Protein sequence : 
MSITPASTPNSDAPATGTARVKRGMAEQLKGGVIMDVVTPEQAKVAEDAGAVAVMALERVPADIRKDGGVARMSDPDMIE
GIIGAVSIPVMAKSRIGHFVEAQVLQSLGVDYIDESEVLTPADEVNHSDKWSFTTPFVCGATNLGEALRRIAEGAAMIRS
KGEAGTGNVVEAVRHLRQIKGEIARLRGLDNHELYAAAKEIRAPYELVAEIAQTGKLPVVLFSAGGVATPADAALMRQLG
AEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKVIADASRDLGEAMVGINCDTLPESERYASRGW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0227 NP_938620.1 pyridoxal biosynthesis lyase PdxS Not tested Not named Protein 1e-108 79
pdxS YP_005137204.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-108 79
pdxS YP_005141805.1 pyridoxine biosynthesis protein Not tested Not named Protein 1e-108 79