Gene Information

Name : Strvi_1346 (Strvi_1346)
Accession : YP_004811375.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1193785 - 1194471 bp
Length : 687 bp
Strand : -
Note : KEGG: sma:SAV_3229 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence : 
ATGACCCCGGCAGGCTCCTTGCTGATCGCCACGTCCCTGAACAAGACGTACGGTCACACCCCCGCGCTGGACGGTGCGGA
CTTCTCCATCCACCCCGGCGAGGTCGTCGCCGTCATGGGCCCCTCCGGCTCCGGCAAGTCGACGCTCCTCCACTGCCTGG
CCGGGATCGTCCGGCCGGACGCCGGCACCGTCCACTACAACGGGCGCGAGCTGACCGCCATGTCGGACACCGAGCGCAGC
GGTCTGCGCCGCGGCGAGTTCGGCTTCGTCTTCCAATTCGGCCAGCTCGTGCCCGAGCTGAGCTGTGTGGAGAACGTCGC
CCTGCCGCTGCGGCTGAACGGCACCAAGCGCAAGGAGGCCGAGGCCCGCGCCGAGTCCTGGATGGAGCGGCTGGAGGTCG
CGGACGTGGCCCACAAGCGGCCCGGCGAGGTCTCCGGCGGCCAGGGGCAGCGGGTCGCCGTCGCCCGGTCGCTGGTCACC
GCGCCGCGGGTGCTGTTCGCCGACGAGCCGACCGGCGCGCTGGACTCGCTCAACGGCGAGCGCGTCATGGAGCTGCTGAC
CGAGGCCGCCCGCGAGTCCCGTACCGCCGTGGTGCTGGTCACCCACGAGGCCCGGGTCGCCGCCTACTCCGACCGCGAGG
TCGTGGTCCGCGACGGCAAGGCCCGGGACATGGCAGGGGTCCGATGA

Protein sequence : 
MTPAGSLLIATSLNKTYGHTPALDGADFSIHPGEVVAVMGPSGSGKSTLLHCLAGIVRPDAGTVHYNGRELTAMSDTERS
GLRRGEFGFVFQFGQLVPELSCVENVALPLRLNGTKRKEAEARAESWMERLEVADVAHKRPGEVSGGQGQRVAVARSLVT
APRVLFADEPTGALDSLNGERVMELLTEAARESRTAVVLVTHEARVAAYSDREVVVRDGKARDMAGVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 6e-34 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-34 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-34 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_1346 YP_004811375.1 ABC transporter NC_008702.1.4606598. Protein 1e-30 43
Strvi_1346 YP_004811375.1 ABC transporter CP001581.1.gene598.p Protein 8e-35 42
Strvi_1346 YP_004811375.1 ABC transporter NC_012469.1.7686878. Protein 4e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_1346 YP_004811375.1 ABC transporter VFG2059 Protein 9e-20 41