Gene Information

Name : Strvi_1258 (Strvi_1258)
Accession : YP_004811291.1
Strain : Streptomyces violaceusniger Tu 4113
Genome accession: NC_015957
Putative virulence/resistance : Resistance
Product : Cys/Met metabolism pyridoxal-phosphate-dependent protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 1090786 - 1091949 bp
Length : 1164 bp
Strand : +
Note : PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: sma:SAV_3305 cystathionine gamma-synthase

DNA sequence :
ATGAGCCACCAGCACCCCGAGGGGCACCCTCAGAGTTTCGAGACGCTCGCCATCCACGCGGGCCAGGAGGCCGACTCGCT
CACCGGCGCCGTCGTCCCCCCGATCTACCAGGTCTCCACCTACAAGCAGGACGGGGTGGGCGGTCTGCGGGGCGGCTATG
AGTACAGCCGTTCCGCCAACCCCACCCGCAGCGCGCTGGAGGCGAACCTGGCGGCGCTGGAGGGTGGCCGCCGCGGCCTC
GCCTTCGCGTCCGGTCTCGCCGCCGAGGACTGCCTGCTGCGCACGCTTCTGGTGCCGGGCGACCATGTCGTCATCCCGGA
CGACGCGTACGGCGGTACGTTCCGCCTGTTCGCCAAGGTCGTGGAGCGCTGGGGGGTGGAGTGGTCGGTCGCCGACACTT
CCGACCCGGCGGCCGTACGGGCCGCGCTCCGCCCCCGTACGAAGGTGATCTGGGTCGAGACCCCGAGCAACCCGCTGCTC
GGCATCACCGACATCGCCGCCGTCGCCGACATCGCCCGCACCGCGGGGGCCAGGCTGGTGGTGGACAACACCTTCGCCAG
CCCCTACCTCCAGCAGCCGCTCGCGCTCGGCGCGGACGTCGTGGTGCACTCCACCACCAAGTACATGGGTGGGCACTCGG
ACGTCGTCGGCGGTGCGCTGGTCGTCTCCGACACCGGCCTCGGGGACGAACTCGCCTTCCACCAGAACGCGATGGGCGCC
ATCGCCGGGCCCTTCGACGCCTGGCTGGTGATGCGCGGCATCAAGACCCTCGCCGTCCGCATGGACCGGCACAGCGCCAA
CGCCACGCGGATCGCGGAGATGCTCGTCGCGCACCCCAAGGTGACCCGGGTCTACTACCCGGGGCTGCCGGAGCACGCGG
GGCACGAGATCGCGGCCAAACAGATGCGGGCCTTCGGCGGCATGGTGTCGTTCCAGGTCGCGGGCGGCGAGGAGGCGGCG
GTCGACATGTGCGACCGGGCGCGGCTGTTCACGCTCGGGGAGTCGCTCGGCGGCGTCGAGTCGCTGATCGAGCACCCGGG
GCGGATGACGCACGCCTCGGTGGCAGGCTCGGCGCTCGAGGTGCCGGCGGATCTCGTACGGCTGTCGGTGGGTATCGAGT
CGGTCGACGATCTGCTCATGGACCTGAGCCGGGCGCTGGGCTGA

Protein sequence :
MSHQHPEGHPQSFETLAIHAGQEADSLTGAVVPPIYQVSTYKQDGVGGLRGGYEYSRSANPTRSALEANLAALEGGRRGL
AFASGLAAEDCLLRTLLVPGDHVVIPDDAYGGTFRLFAKVVERWGVEWSVADTSDPAAVRAALRPRTKVIWVETPSNPLL
GITDIAAVADIARTAGARLVVDNTFASPYLQQPLALGADVVVHSTTKYMGGHSDVVGGALVVSDTGLGDELAFHQNAMGA
IAGPFDAWLVMRGIKTLAVRMDRHSANATRIAEMLVAHPKVTRVYYPGLPEHAGHEIAAKQMRAFGGMVSFQVAGGEEAA
VDMCDRARLFTLGESLGGVESLIEHPGRMTHASVAGSALEVPADLVRLSVGIESVDDLLMDLSRALG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 6e-79 48
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 5e-80 48
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 2e-59 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_1258 YP_004811291.1 Cys/Met metabolism pyridoxal-phosphate-dependent protein BAC0207 Protein 4e-63 45