Gene Information

Name : Strvi_9426 (Strvi_9426)
Accession : YP_004800164.1
Strain :
Genome accession: NC_015951
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 187135 - 188019 bp
Length : 885 bp
Strand : +
Note : PFAM: Integrase, catalytic core; KEGG: psm:PSM_A2935 transposase ORFB

DNA sequence : 
GTGATAGACCACCTGCGTGACAGAGGTCTCGGGGTCGATCCCGTCTGCCGGGTGCTGGACCTGTCGCTGTCGACGTACTT
CGCCCGCAAGAAGCGGCCGAAGTCGGCCCGCCGGCTCCGCGACGAGCAGCTGATGCCGCTGATCGAGCAGGTCCACGCGG
AGTCGGGCGGCACCTATGGCGCCCGCCGGATCACCCGCGCTCTTCGGCGCAAGGGCCACGAGGTGGCCCGCTGCACCGTC
GAGCGGCTGATGGCCGAGCTCGGCATCGAGGGCGTCATCCGTGGCCGGCGGCGCCGCACCACCATCCCGGAGCCGTCGGC
ACCCCGCCCGCCGGACCTGGTCGACCGCGACTTCACCGCCTCCCGGCCCGACCAGCTCTGGGTGGCGGACATGACTTATG
TCCGCACCTGGTCCGGCTGGGCATACGTGGCATTCGTCCTGGACGTGTACTCACGGATGATCGTCGGCTGGCAGGTCGCG
AACCACATGCGGACCGAACTCCCGCTGGACGCTCTGGAGATGGCGCTGTGGAGACGGAGGATCAAGAAGGACTCCGGCCT
CATTCATCACAGCGACCGCGGGTCGCAATACGTGTCAATTCGGTATACTGACCGGCTGTCCGACATCGGCGCCTCAGCGT
CGGTCGGCTCGGTCGCGGACTCGTATGACAACGCGATGGCCGAGGCCCTGAACGGCACCTTCAAGGCCGAGCTCATCGAG
ATGCAGGACCCCTGGAAGGACGTCGACCAGGTCGAGCGGGCGATCTTCCAGTGGATCACGTGGTACAACGAAGAACGCCT
CCACTCCGCACTCGACTACGTACCGCCCGCCGAGTACGAGCAAGCCTTCTGGCAGAGCCAGGAGCAAGTCCCGCAGTCCG
CCTGA

Protein sequence : 
MIDHLRDRGLGVDPVCRVLDLSLSTYFARKKRPKSARRLRDEQLMPLIEQVHAESGGTYGARRITRALRRKGHEVARCTV
ERLMAELGIEGVIRGRRRRTTIPEPSAPRPPDLVDRDFTASRPDQLWVADMTYVRTWSGWAYVAFVLDVYSRMIVGWQVA
NHMRTELPLDALEMALWRRRIKKDSGLIHHSDRGSQYVSIRYTDRLSDIGASASVGSVADSYDNAMAEALNGTFKAELIE
MQDPWKDVDQVERAIFQWITWYNEERLHSALDYVPPAEYEQAFWQSQEQVPQSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-39 56
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-39 56
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 4e-43 54
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-49 51
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-49 51
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 5e-49 51
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-35 51
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-47 50
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-47 50
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 8e-48 50
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 3e-48 50
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-49 50
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-49 50
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-47 50
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 9e-49 50
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 1e-48 50
Z1198 NP_286733.1 transposase Not tested TAI Protein 5e-49 49
Z1638 NP_287141.1 transposase Not tested TAI Protein 5e-49 49
Z1221 NP_286756.1 transposase Not tested TAI Protein 4e-49 49
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 7e-49 49
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 7e-47 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 4e-49 48
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-31 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strvi_9426 YP_004800164.1 integrase catalytic subunit VFG1602 Protein 4e-47 49