Gene Information

Name : Calla_0909 (Calla_0909)
Accession : YP_004798533.1
Strain : Caldicellulosiruptor lactoaceticus 6A
Genome accession: NC_015949
Putative virulence/resistance : Virulence
Product : Lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 977367 - 978860 bp
Length : 1494 bp
Strand : -
Note : TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: cki:Calkr_1523 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type

DNA sequence : 
GTGGGGATGCAGGATTTTGAGTTTACGCAGGAAGAGCTAAACGAGCAGATACAAAACAGGATAAAAAAGCTAAAAGAACT
TCAGCAGAATAAATACAATCCATATGAAAAGGTAAAATACGACCCGACACATTATTCCACTGATATTAAAGAAAACTTTG
AAGTATTTGAAGGCAAGTTTGTCTGTGTTGCAGGAAGGATGCTTTCAAAAAGAGGCCATGGCAAGGCTTCATTTGTGGAT
ATTTTGGACACAAAAGGGAAAATCCAGATTTATATAAAGATTGATGAAGTTGGAGAAGAAAAGTACGAGGAGTTCAAAGA
GTATTATGATATCGGAGATATAATAGGTGTAAAAGGTGAGGTTTTCAAGACTCACAAGGGCGAAATTTCGGTAAAGGCAA
AAGAGATTGAGATGCTCACCAAATGTTTGCGACCACTTCCTGAAAAGTGGCATGGGCTTAGAGACATTGATACAAGGTAT
AGAAAAAGGTATCTTGACCTTATTGTAAATCCTCAGGTTCGGGATACTTTTATCAAAAGGAGCTTAATAATCCGTTCCAT
TCGCAAATTTTTAGATGACAGGGGATTTTTGGAAGTAGAAACGCCTGTTTTGAGCCCTGTTGCAGGTGGTGCTGCTGCAA
GACCTTTTATTACCCATCACAATGCTTTAGACATTGACCTGTATTTGAGAATTGCAACAGAGCTTCACTTAAAAAGACTT
ATAGTTGGTGGGTTTGACAAGGTATACGAGCTTGGTCGAGTATTTAGAAATGAAGGTATTTCAATAAAACACAATCCGGA
ATTTACAACCATTGAGATTTACCAGGCGTATGCTGACTATAAGGAGATGATGGAACTTACTGAAAAGCTCATCACAACGG
TTGCACAAGAGGTTCTGGGCACATTAAAAATAACATATCAAAGGCAGGAGATTGACCTGACACCGCCATGGCAAAGACTT
ACCATGGTTGAAGCAATCAAAAAATATGTTGGTGTGGACTTTGAAAATGTTACTTCTCTGGATGAAGCAAGAAAAATTGC
AAAGGACCTTGGGATTGAGGTTGAGGAAAACTGGCAGGTAGGTCATATTATAAACGAGGTGTTTGAGAAAAAGGTTGAAG
ATTTTCTTGTCCAGCCCACGTTTATAATGGACTATCCGGTTGAGGTTTCTCCGCTTGCAAAGAGAAAGAAAGACAATCCA
CAGTTTACAGAGAGGTTTGAACTTTTCATTACATGCAGGGAAATTGCAAATGCATTTTCTGAGCTGAATGACCCGTTTGA
TCAGAAAGAGAGATTTTTAGAGCAGCTCAAGGAAAGGCAGAGAGGCAACCAAGAAGCCCACATGATGGATGAGGACTTTA
TAGAAGCGCTTGAGTACGGCATGCCACCGACAGGTGGGCTTGGAATAGGAATTGACAGGCTGGTTATGCTTCTGACAGAT
TCATATTCAATCAGAGATGTGTTACTTTTCCCAACAATGCGACCAAAGGATTAG

Protein sequence : 
MGMQDFEFTQEELNEQIQNRIKKLKELQQNKYNPYEKVKYDPTHYSTDIKENFEVFEGKFVCVAGRMLSKRGHGKASFVD
ILDTKGKIQIYIKIDEVGEEKYEEFKEYYDIGDIIGVKGEVFKTHKGEISVKAKEIEMLTKCLRPLPEKWHGLRDIDTRY
RKRYLDLIVNPQVRDTFIKRSLIIRSIRKFLDDRGFLEVETPVLSPVAGGAAARPFITHHNALDIDLYLRIATELHLKRL
IVGGFDKVYELGRVFRNEGISIKHNPEFTTIEIYQAYADYKEMMELTEKLITTVAQEVLGTLKITYQRQEIDLTPPWQRL
TMVEAIKKYVGVDFENVTSLDEARKIAKDLGIEVEENWQVGHIINEVFEKKVEDFLVQPTFIMDYPVEVSPLAKRKKDNP
QFTERFELFITCREIANAFSELNDPFDQKERFLEQLKERQRGNQEAHMMDEDFIEALEYGMPPTGGLGIGIDRLVMLLTD
SYSIRDVLLFPTMRPKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-108 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_0909 YP_004798533.1 Lysyl-tRNA synthetase VFG1668 Protein 1e-108 54