Gene Information

Name : Calla_0030 (Calla_0030)
Accession : YP_004797702.1
Strain : Caldicellulosiruptor lactoaceticus 6A
Genome accession: NC_015949
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 43306 - 43992 bp
Length : 687 bp
Strand : -
Note : KEGG: ate:Athe_0111 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core

DNA sequence : 
TTGTCTGCAAATGAAGCTCTTATAAAAGTTGAAAATGTGAAAAAATCCTTTAAAATGGGCACAAACAGTGTGGAAGTCTT
AAGAGGAATAAGTTTAGAAATCTACCAAGGTGAGTTTGTTGCAATTGTTGGTGAGTCAGGTTCAGGCAAAACAACCCTCT
TGAATATCATTGGTGGTCTTTTAAGACCTTCTGAAGGAAGCGTTGTAATTGCCAACAAAGACATCACAGCTATGAGTGAA
AATCAGCTTGCCATCTTTAGAAGAGAAAACATAGGGTTTGTTTTTCAGTCATACAACCTGATACCTCATTTTACAGCAGT
TGAAAATGTTGAAATTCCGCTTATGTTCAAGGGAATTAGCAAAAAGAAGCGTCGTGAGATGGCCACTCTGATGCTTGAAA
AGGTAGGTCTAAAAGATAGGCTTTTTCACAAACCTACTGAACTTTCTGGTGGGCAGCAACAAAGAGTTGCAATTGCAAGG
GCGCTTGTAACATCCCCTAAGATAATTCTTGCTGATGAACCAACAGGAAATCTTGATAGCAAAAATGGTCAAGAAATTCT
TGATCTTATGCTTTATCTTAACAAAAATGAAAATATCACATTCGTTGTCGTAACCCACTCTCAAGTTGTGAGCAAAACAG
CTTCAAGGATAATCAGGATTGCTGATGGACAGATAATTGGAACCTAA

Protein sequence : 
MSANEALIKVENVKKSFKMGTNSVEVLRGISLEIYQGEFVAIVGESGSGKTTLLNIIGGLLRPSEGSVVIANKDITAMSE
NQLAIFRRENIGFVFQSYNLIPHFTAVENVEIPLMFKGISKKKRREMATLMLEKVGLKDRLFHKPTELSGGQQQRVAIAR
ALVTSPKIILADEPTGNLDSKNGQEILDLMLYLNKNENITFVVVTHSQVVSKTASRIIRIADGQIIGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-38 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-39 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-39 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_0030 YP_004797702.1 ABC transporter-like protein NC_012469.1.7686878. Protein 8e-48 49
Calla_0030 YP_004797702.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-44 48
Calla_0030 YP_004797702.1 ABC transporter-like protein CP001581.1.gene598.p Protein 8e-44 47
Calla_0030 YP_004797702.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-40 46