Gene Information

Name : Calla_2321 (Calla_2321)
Accession : YP_004799830.1
Strain : Caldicellulosiruptor lactoaceticus 6A
Genome accession: NC_015949
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2459252 - 2459944 bp
Length : 693 bp
Strand : -
Note : KEGG: cki:Calkr_2460 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver r

DNA sequence :
ATGTCCAAAGCACATATCCTTGTTGTTGATGATGAAAAGCCAATTGTTGATATTATAAAGTTCAACTTGGAAAAAGAAGG
GTACAAGGTGACAGCATCGTATGACGGTGAGGACGCGTTAAATAGAATAAAAAGTGAAAACTTCGACATGGTTCTTCTGG
ATGTAATGCTTCCCAAACTTGATGGATTTTCTGTGTGCAAGAAGGTTCGTGAGTTTTCGGATGTTCCGATTATAATGATA
ACAGCAAAGGCTGATGAGGTTGACAAAGTTTTGGGTTTGGAGCTTGGGGCGGATGATTACATAACAAAACCGTTTGGAAT
AAGAGAGCTTATTGCGCGCATTAGAGCAAACTTGAGAAGGACAGCTCAAAGCGCTTCGCAAGATGGCAAGGTGTTAAAAG
CAGGGGCTTTGACCTTAAACCCAGAGACGTTTGAAGTGAAGAAAAATGGCAAAGTTATTGAACTTACCGTAAGAGAATAT
GAGCTTTTAAAGTTTTTGATGTCACAAAAGGGTCAGGTGTTTTCAAGAGAAGAGCTTTTGGAAAAGGTTTGGGACTATGA
ATACTATGGAGATGTAAGAACTGTTGATGTTACTGTCAGAAGGCTTAGAGAAAAGATAGAAGATAATCCGTCTGAGCCCA
ATTTTATTTTAACAAAGAGGGGAATTGGCTACTACTTTAATCCTAACATATAA

Protein sequence :
MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKLDGFSVCKKVREFSDVPIIMI
TAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQSASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREY
ELLKFLMSQKGQVFSREELLEKVWDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-54 56
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 8e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 9e-50 51
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 1e-49 50
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 1e-49 50
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 5e-44 48
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 6e-44 47
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP001138.1.gene4273. Protein 3e-28 46
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 3e-24 46
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator AE016830.1.gene1681. Protein 9e-42 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-39 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 4e-28 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator BAC0533 Protein 4e-28 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_002695.1.915041.p Protein 7e-28 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP000034.1.gene3834. Protein 7e-28 45
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 5e-34 44
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator AM180355.1.gene1830. Protein 3e-37 44
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator AF155139.2.orf0.gene Protein 1e-39 43
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator DQ212986.1.gene4.p01 Protein 2e-37 43
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 6e-35 43
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 2e-30 43
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 9e-32 42
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator BAC0308 Protein 1e-27 41
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator EU250284.1.orf4.gene Protein 2e-34 41
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_005054.2598277.p0 Protein 9e-35 41
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator NC_014475.1.orf0.gen Protein 9e-35 41
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 3e-34 41
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator CP001485.1.gene721.p Protein 1e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_2321 YP_004799830.1 winged helix family two component transcriptional regulator VFG1563 Protein 3e-37 41