Gene Information

Name : Calla_2103 (Calla_2103)
Accession : YP_004799643.1
Strain : Caldicellulosiruptor lactoaceticus 6A
Genome accession: NC_015949
Putative virulence/resistance : Resistance
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2206091 - 2206744 bp
Length : 654 bp
Strand : +
Note : KEGG: cki:Calkr_0246 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver r

DNA sequence : 
TTGAAGATACTGCTGATTGAAGATGAAGAAAAACTCAGAAAAATAATAAAGTTATATCTTGAAAAAGAAGGATTTGAAGT
AGAAGAAGCATCGGACGGAAACGAAGCAATCGAAAAATTTCAACCTTCAATGTACTCAGTTGTAATCTTAGATGTGATGC
TACCCCAAAAAGATGGCTGGAGTGTGCTAAGAGAAATAAGGAAAAAGGATGATACGCCAGTTATTATGCTAACAGCTCGT
GGAGAGGATGATGATAAGATATTTGGATTTGAACTTGGTGCTGATGATTATGTTGTAAAGCCTGTCAGTCCTAAGGAGAT
TGTTGCACGTGTAAAGGCAATTTTAAAGAGAACCAAAAAGCCCAATTCAAATGACATTTTGTTTATCGACAAAGCAGCAA
GAGAAGTATATGTAAAAGGTCAAAAAATAAATCTTACTCAAAAAGAATATGAGCTTTTATTGTACCTATATGAAAGGCAA
AACATTGCCCTTTCAAGAGAGCAGATTTTAAATAGCGTATGGGGTTATGAATATTATGGAGATCTTAGAACTGTGGATAC
ACATATTAAAAACCTCAGAGAGAAGCTTGGAGATCTCAGAGATTACATTAAAACAGTAAGAGGTTATGGATACAAGTTTG
AGGTGAAAAAATGA

Protein sequence : 
MKILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWSVLREIRKKDDTPVIMLTAR
GEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKKPNSNDILFIDKAAREVYVKGQKINLTQKEYELLLYLYERQ
NIALSREQILNSVWGYEYYGDLRTVDTHIKNLREKLGDLRDYIKTVRGYGYKFEVKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanRB YP_008394254.1 DNA-binding response regulator VanRB Not tested Not named Protein 4e-35 42
vanRB NP_815956.1 DNA-binding response regulator VanRB Not tested Not named Protein 5e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 2e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 2e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 1e-35 48
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator CP000675.2.gene1535. Protein 1e-35 43
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-26 43
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 2e-36 43
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 1e-34 43
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator AF310956.2.orf0.gene Protein 1e-35 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 3e-29 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_012469.1.7686381. Protein 4e-34 42
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator AE016830.1.gene2255. Protein 2e-34 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator U35369.1.gene1.p01 Protein 2e-34 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator AF162694.1.orf4.gene Protein 2e-25 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_010400.5986590.p0 Protein 9e-29 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_010410.6002989.p0 Protein 2e-29 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator NC_011595.7057856.p0 Protein 2e-29 41
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator EU250284.1.orf4.gene Protein 9e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_2103 YP_004799643.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-22 42