Gene Information

Name : Calla_1939 (Calla_1939)
Accession : YP_004799490.1
Strain : Caldicellulosiruptor lactoaceticus 6A
Genome accession: NC_015949
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 2038660 - 2039421 bp
Length : 762 bp
Strand : -
Note : KEGG: cki:Calkr_0422 flagellar biosynthetic protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein

DNA sequence : 
ATGATGAAAAAAAATAAGTCTCTTTATATTATATCGACACTATTTTTAATTTTAATAACTACATGTGCAAAAAAAGAAAT
AGCCTTTGCATCGGCAAGCATTAATATAAATCTTGGCAGTCCGCAAAATCCAAAGGATGTGTCGTCTGCCCTGCAACTTA
TTATATTTCTCACCATCCTGACGTTAGCACCATCTATCCTGATAATGATGACATCATTTACAAGGATACTTATTGTCCTT
GGATTTGTTCGAAACGCGCTCGGTACCCAGCAGATGCCGCCAAACCAGATTTTGATTGGGCTTGCACTCTTTTTGACCTT
TTTTGTAATGGCGCCTGTGACTGACAAGATTTATACCCAGGCTTATCAGCCATACATAAATGGGAGAATAACATCCCAGG
AAGCTCTCAAAAGGGCAGAAGAGCCTTTAAAAGAGTTTATGTTGAAAAATACTCGCAAAAAAGACCTTGACCTTTTTGTA
AAGCTTAGCAATGTAAATCCAAACACGAATGTAAAAGACCTTCCACTAAGAGTTGTAGTTCCTGCTTTTATAATAAGTGA
GCTTAAAAGTGCGTTCGAAATGGGGTTTTTAATATATGTGCCATTTTTAATAATTGACATGGTTGTTGCAAGTATTCTGA
TGTCAATGGGAATGCTGATGATTCCGCCTGTTATGATATCACTACCTTTCAAAATTTTGCTGTTTATTTTGGTTGATGGT
TGGAATTTAGTTGTAGAGTCGCTTGTGAGAAGTTTTAAATAA

Protein sequence : 
MMKKNKSLYIISTLFLILITTCAKKEIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVL
GFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKEFMLKNTRKKDLDLFV
KLSNVNPNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDG
WNLVVESLVRSFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-30 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-28 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-27 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-23 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-23 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-30 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-30 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-30 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-30 42
escR AAK26700.1 EscR Virulence LEE Protein 1e-30 42
escR AAL57527.1 EscR Virulence LEE Protein 1e-30 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-30 42
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-30 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-30 42
escR AAC31528.1 L0049 Virulence LEE Protein 1e-30 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-33 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-34 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 2e-22 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 2e-22 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-34 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-34 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-29 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 3e-29 41
escR AAC38369.1 EscR Virulence LEE Protein 9e-30 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 7e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-57 60
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-58 57
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG2016 Protein 7e-54 57
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG2494 Protein 4e-58 57
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-37 43
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG0827 Protein 7e-31 42
Calla_1939 YP_004799490.1 flagellar biosynthetic protein FliP VFG0715 Protein 5e-30 41