Gene Information

Name : Murru_0033 (Murru_0033)
Accession : YP_004786513.1
Strain : Muricauda ruestringensis DSM 13258
Genome accession: NC_015945
Putative virulence/resistance : Unknown
Product : ribosomal RNA large subunit methyltransferase H
Function : -
COG functional category : S : Function unknown
COG ID : COG1576
EC number : -
Position : 29643 - 30116 bp
Length : 474 bp
Strand : +
Note : PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH; COGs: COG1576 conserved hypothetical protein; HAMAP: SPOUT methyltransferase, predicted; InterPro IPR003742; KEGG: fbc:FB2170_13638 hypothetical protein; PF

DNA sequence :
ATGCAGATTACTTTGATTGCCATTGGGAAAACCGACAAGTCTGAACTTGAAGAACTTATAGCCGTTTATGAGAAGCGGCT
GAAGCATTATATCAAGTTTCAAATAGATATAATTCCCGATATAAAAAACAGAAAAAATCTTTCCGAAGCCCAACAAAAGG
AAAAAGAGGGCGAACTCATTTTGGCACAACTGCAACCAACGGACACTTTAATCTTGCTTGACGAGAAGGGAAAGCAATAC
TCCTCCTTGGATTTTGCCCAGTTCTTGCAAAAAAAGATGAACAGCGGCATTAAAAACCTTGTTCTGGCCATTGGTGGCCC
CTATGGTTTTAGCAATACTGTTTACGCCAAAAGTTCGGGAAAAATAAGTTTGTCCAAAATGACATTTTCCCACCAAATGG
TACGGTTGTTTATTGTGGAGCAAATTTATAGGGGATTCACCATTCTTCGGAATGAACCTTACCACCATCAATGA

Protein sequence :
MQITLIAIGKTDKSELEELIAVYEKRLKHYIKFQIDIIPDIKNRKNLSEAQQKEKEGELILAQLQPTDTLILLDEKGKQY
SSLDFAQFLQKKMNSGIKNLVLAIGGPYGFSNTVYAKSSGKISLSKMTFSHQMVRLFIVEQIYRGFTILRNEPYHHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 6e-26 45
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 6e-26 45
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 6e-26 45
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 6e-26 45
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 6e-26 45
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 6e-26 45
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 6e-26 45
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 6e-26 45
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-26 45
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 6e-26 45
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 9e-26 45
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 6e-26 45
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 4e-25 44
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 7e-26 43
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 1e-24 42
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 1e-24 42