Gene Information

Name : Acife_2890 (Acife_2890)
Accession : YP_004785290.1
Strain : Acidithiobacillus ferrivorans SS3
Genome accession: NC_015942
Putative virulence/resistance : Virulence
Product : putative two component, sigma54 specific, transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2852833 - 2854212 bp
Length : 1380 bp
Strand : -
Note : KEGG: afr:AFE_2955 sigma-54 dependent DNA-binding response regulator, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATP

DNA sequence : 
ATGGAAAAGGGCAGAATTTTACTGGTGGATGATGACGCTGATCTCTTGCGTTTGTTGTCTTTGCGTATGAAAACGGCTGG
CTATGCCGTCAGTACCGCTGCCAGTGGCAACGAGGCGCTGTCGGTGCTGGCGATGGAGCATCCGTCTTTGGTCATCACTG
ATCTCAAGATGGACGAGATGGACGGGATGGCACTGCTCGACGCCATCCGCCGTGACTACCCGACTTTGCCCGTCATCATC
CTCACTGCCCATGGTTCCATCCCTGATGCTTTGCTGGCGGCAGATCAGGGCGTTTTTGCCTTCCTCACCAAACCCTTTGA
CGGCAAGGATCTGATGGCGCAGGTCGAACGCGCCTTCAGCCTGACCGCGGCGGTTCTGCCCTCTTCGGGTAAGAAGGGCA
GGGACTCCAGTTGGGACCGTATCCTGACCCGCAGTCCAAAAATGCAGACGGTGCTGGATCAGGCGCGTCTGGTAGCAGCG
TCTGATGCCAGTGTTTTTGTGCATGGTGCCAGCGGTACGGGTAAAGAATTACTGGCGCAGGCCATTCATCAGGCCAGCCC
GCGCCGTAATCAGGCCTTTATCGCACTTAACTGTGCCGCTTTTCCCGAACAACTCCTGGAGTCCGAACTCTTCGGGCATA
AAAAGGGCGCCTTTACCGGCGCGGCCAATAATCATCAGGGGCTGTTTCAGGCGGCGGATAGCGGCACACTCTTTCTCGAT
GAAATTGGCGACATGCCTCTCTCCTTGCAGGTCAAGCTGCTACGGGCCCTGCAGGAACGGGTCATCCGCCCTGTTGGCGC
CACCGAGAGCATCGCCGTGGATGTGCGGATCATCTCTGCAAGTCATCGGGATCTGGAGCAGGAGATGGCTGCCCGGCGGT
TCCGGGATGATCTCTATTATCGTCTTTGTGTGGTGACTCTGGATCTGCCTGCCCTGGCTGAGCGCCCCGAGGATATCCCG
CTGCTGGCCGAGTTTTTTTTACGCGATACGGCGGCCAAAAACCGCAAGGATGTCCGTGGTATCGCGCCGGAGGCCATGGA
ACTGCTGGTGGGAGCGCCCTGGCCGGGTAACGTCCGGCAACTGGCCAACGTCATTGAACAGGCGGTGGTGCTGTCTACCA
CTCCGCGAATCGGTGCGCCCCTCATCCGCCACGCTTTGCGCGACAGAGAGGGTGAAGTCATGCCCCTGGCCGATGCCAAG
GGCCGTTTCGAAATGCATTATCTGATCCAGATTATGCGCATGACACGGGGCAACGTGAGTCAGGCTGCGCAATTGGCGCA
GCGCAACCGAACGGAGTTTTATCGCCTGCTGCGCCGCTATCACCTGGACCCCGCTGCCTTCAAAGAAACGGGCAGCGATG
AAGGCGAAGCGGAGGTATAG

Protein sequence : 
MEKGRILLVDDDADLLRLLSLRMKTAGYAVSTAASGNEALSVLAMEHPSLVITDLKMDEMDGMALLDAIRRDYPTLPVII
LTAHGSIPDALLAADQGVFAFLTKPFDGKDLMAQVERAFSLTAAVLPSSGKKGRDSSWDRILTRSPKMQTVLDQARLVAA
SDASVFVHGASGTGKELLAQAIHQASPRRNQAFIALNCAAFPEQLLESELFGHKKGAFTGAANNHQGLFQAADSGTLFLD
EIGDMPLSLQVKLLRALQERVIRPVGATESIAVDVRIISASHRDLEQEMAARRFRDDLYYRLCVVTLDLPALAERPEDIP
LLAEFFLRDTAAKNRKDVRGIAPEAMELLVGAPWPGNVRQLANVIEQAVVLSTTPRIGAPLIRHALRDREGEVMPLADAK
GRFEMHYLIQIMRMTRGNVSQAAQLAQRNRTEFYRLLRRYHLDPAAFKETGSDEGEAEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-58 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-58 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_2890 YP_004785290.1 putative two component, sigma54 specific, transcriptional regulator BAC0467 Protein 9e-79 50
Acife_2890 YP_004785290.1 putative two component, sigma54 specific, transcriptional regulator BAC0089 Protein 2e-82 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_2890 YP_004785290.1 putative two component, sigma54 specific, transcriptional regulator VFG1249 Protein 1e-68 47
Acife_2890 YP_004785290.1 putative two component, sigma54 specific, transcriptional regulator VFG1214 Protein 1e-65 45
Acife_2890 YP_004785290.1 putative two component, sigma54 specific, transcriptional regulator VFG0116 Protein 2e-55 41