Gene Information

Name : Acife_2859 (Acife_2859)
Accession : YP_004785259.1
Strain : Acidithiobacillus ferrivorans SS3
Genome accession: NC_015942
Putative virulence/resistance : Virulence
Product : two component sigma-54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2825255 - 2826613 bp
Length : 1359 bp
Strand : -
Note : KEGG: afe:Lferr_0364 two component sigma-54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction r

DNA sequence : 
ATGATGGCCGATTTTTCCGTGTTGCCACCTGCCCTGATCGTGGATGATGAGCCGAACATTGTTGAATTGTTGGGTATTAC
GCTGCAAGGTATGGGAATTGCCGTCACGGGTGCCTATTCCCTCGCAGAGGCCTTCGCCTGCCTCGCCGAAGGTGCCCCCT
CTTTATGTTTGAGCGATCTGCGGTTACCGGATGGTTCGGGTATTGATTTGGTACGTCGTCTACACGTGTTGCATCCGCAA
GTGCCGGTCGCCGTGATTACGGCCTACTCCTCCGCCGATGGCGCCGTCGAGGCGATGCAGGCCGGGGCCTTTGATTACAT
GGCTAAGCCCATCGAACTTACGCGTCTGCGGCGACTGATATCGCAAGCGGTTGATCTCGCTCGCCTGTCACCGGTGGGTT
CGGACGGTACGCAAAGGCTCGTGGGCGATTCTCCGGTGATGCGGCGCTTACGCGACGATATCCGCCGTGTTGCGCGAAGT
AATGCGCCAGTGCACATTACCGGTGAGTCTGGTACTGGTAAGGAGTTGGCAGCGCGTGCGATCCACGCCTCGGGGGTCCG
TCACGACAAGCCTTTCGTGGCAGTCAACTGTGGCGCCATTCCCGAGGGACTGGTAGAAAGTGAGCTCTTTGGTGCCGAGA
AGGGGGCTTACTCCGGTGCTGTACAGCGCCGCGAGGGGCTCTTTGTGGCGGCCAATGGCGGCACCATTTTCCTGGATGAG
ATTGGTGAACTACCGATGATGGTGCAGGTTAAGCTCCTGCGCGCCATTCAGGAGCGCAGCATTCGTCCGTTGGGTGCAGC
GCGGGAAATTCCCCTGGATCTGCGTTTCATCTCCGCTACCCACCGCGATTTGCAAGAGATGGTTGTTGCCGGTAACTTTC
GTCGGGATCTTCTGTATCGGCTGGATGTCGTACGGCTCCAAATGCCTCCTTTGCGCGAGCATCCGGAGGACATTCCGCAA
TTGGCAGAGGTGATTCTGCAACGTATCGGGGGCGGGCAGCCTGGTGTGCCGACGCGGCTGCCCGCAGGGACTCTTGCGCG
ATTGGGTGGTTACGCCTTCCCCGGCAATGTTCGCGAGCTGGAAAATTTGCTGGAGCGTCGTCTCGCGTTACAGCGGGACG
ATATTCTGCCCGAAGAAGAACTTACATCCTCTGGCAGCATGGCGTCCGAAAGCAGCGTGCCTGCCGCTGTATCGGCAAGT
GTTGCCGCGACTGGGTTAGACGCGGCCGAGGCAGCATTGCTGCGCCAGATGCTGGGGCTGGCCGGAGGCGACCGGCATCA
TGCCGCAGATCTGCTGGGTGTCAGTGTGCAGTCGCTGGAACTGCGACTCAGCAGATTGTCTCTGGAAGCAATTGCATGA

Protein sequence : 
MMADFSVLPPALIVDDEPNIVELLGITLQGMGIAVTGAYSLAEAFACLAEGAPSLCLSDLRLPDGSGIDLVRRLHVLHPQ
VPVAVITAYSSADGAVEAMQAGAFDYMAKPIELTRLRRLISQAVDLARLSPVGSDGTQRLVGDSPVMRRLRDDIRRVARS
NAPVHITGESGTGKELAARAIHASGVRHDKPFVAVNCGAIPEGLVESELFGAEKGAYSGAVQRREGLFVAANGGTIFLDE
IGELPMMVQVKLLRAIQERSIRPLGAAREIPLDLRFISATHRDLQEMVVAGNFRRDLLYRLDVVRLQMPPLREHPEDIPQ
LAEVILQRIGGGQPGVPTRLPAGTLARLGGYAFPGNVRELENLLERRLALQRDDILPEEELTSSGSMASESSVPAAVSAS
VAATGLDAAEAALLRQMLGLAGGDRHHAADLLGVSVQSLELRLSRLSLEAIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-59 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-59 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_2859 YP_004785259.1 two component sigma-54 specific Fis family transcriptional regulator BAC0467 Protein 8e-59 45
Acife_2859 YP_004785259.1 two component sigma-54 specific Fis family transcriptional regulator BAC0089 Protein 1e-52 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_2859 YP_004785259.1 two component sigma-54 specific Fis family transcriptional regulator VFG1214 Protein 5e-79 54
Acife_2859 YP_004785259.1 two component sigma-54 specific Fis family transcriptional regulator VFG0116 Protein 2e-44 41