Gene Information

Name : Acife_2302 (Acife_2302)
Accession : YP_004784738.1
Strain : Acidithiobacillus ferrivorans SS3
Genome accession: NC_015942
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2281072 - 2281980 bp
Length : 909 bp
Strand : +
Note : PFAM: Integrase, catalytic core; KEGG: tin:Tint_3218 integrase catalytic region

DNA sequence : 
TTGAGGCGTTTCACCGATCAATACCGGGACCGCTTCGGGGTCGAGCCGATCTGCCGAGTCTTGCAGATTGCCCCATCGGG
TTACCGACGTTATGCGGCACAACAGCGGAACCCGACGTTGCGCAGTGCCCGGGCGCAGCGGGACGCGGTGCTCTTGCTGG
AGATTCAGCGGATCTGGCAGGCACACCTGCAGGTCTACGGTGCGGATAAGGTCTGGAAGCAGATGAATCGCGAGGGGATA
CTGGTAGCACGTTGTACCGTAGAGCGCCTGATGCGGCATCTGGGCATACAAGGGGTAGTCCGCGGCAAACGGATCCGCAC
CACGGTTCCAGATACCCAGGTACCCTGTCCACGAGACCGGGTCCACCGGATTTTTCGGGCGGAGCGTCCTGATCAGCTCT
GGGTTTCGGATTTCACCTATGTGTCCACCTGGCAGGGCTGGCTCTATGTTGCTTTCGTGATTGATGTGTTTGCGCGTCGG
ATTGTGGGATGGCAGGTCAGCTCTACCATGCATACGGACTTCGTGCTGGATGTCTTGGAACAAGCGCTACACGCCCGACA
ACCGCAGCGGGACCAATCCCTGATTCACCACAGCGACCGGGGATCGCAATATGTCAGCATCCGCTACACAGAACGGCTTG
CCGAGGCGGGCATCGAACCCTCTGTGGGAAGCAAGGGAGACAGCTATGACAATGCCCTGGCAGAAACCATCAACGGGCTG
TACAAGGCCGAATTAATCCATCGTCGGGCACCCTGGAAAACCAAAGCATCCCTGGAATTGGCCACCCTGGAATGGGTACA
TTGGTTTAATCATCACCGACTTCTGGAGCCCTTGGGTTATATCCCTCCGGCAGAAGCTGAGGCACAATATTACCAGCAAC
TCGAACGTCAGGCCGGTCAAGCGGCATGA

Protein sequence : 
MRRFTDQYRDRFGVEPICRVLQIAPSGYRRYAAQQRNPTLRSARAQRDAVLLLEIQRIWQAHLQVYGADKVWKQMNREGI
LVARCTVERLMRHLGIQGVVRGKRIRTTVPDTQVPCPRDRVHRIFRAERPDQLWVSDFTYVSTWQGWLYVAFVIDVFARR
IVGWQVSSTMHTDFVLDVLEQALHARQPQRDQSLIHHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGL
YKAELIHRRAPWKTKASLELATLEWVHWFNHHRLLEPLGYIPPAEAEAQYYQQLERQAGQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-62 65
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 5e-62 64
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-69 63
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-77 63
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-78 62
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-78 62
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-78 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 3e-78 62
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-78 62
Z1221 NP_286756.1 transposase Not tested TAI Protein 1e-78 62
Z1198 NP_286733.1 transposase Not tested TAI Protein 4e-78 62
Z1638 NP_287141.1 transposase Not tested TAI Protein 4e-78 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-79 61
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-79 61
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-79 61
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 1e-78 61
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-79 61
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 8e-79 61
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-79 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-76 59
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-55 59
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-54 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 9e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_2302 YP_004784738.1 integrase catalytic subunit VFG1602 Protein 4e-76 59