Gene Information

Name : Acife_1993 (Acife_1993)
Accession : YP_004784439.1
Strain : Acidithiobacillus ferrivorans SS3
Genome accession: NC_015942
Putative virulence/resistance : Virulence
Product : ParB domain-containing protein nuclease
Function : -
COG functional category : K : Transcription
COG ID : COG1475
EC number : -
Position : 1969537 - 1970214 bp
Length : 678 bp
Strand : -
Note : KEGG: dds:Ddes_1577 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease

DNA sequence :
ATGGCCAGGAAGAAGCAACCAGTAGAGGCGCAGGCTATCAGTGCCCATGTCACAGACCCCATAAGTGTATTGATGGAGCA
GTTGCAGTCCGCTCTTGTCGCGGCGTCCGGTGCCGCGGTGGAAGACCGTGTGGCCCGTTATAATGCCCTGGTCACCATGG
CGGCAGAACACGTCAATCTTCCACATCCCGCGCTGGGCATGCAGTTGGTGCCGGTGGATACGGTACAGGGGAATGACTAC
AACCCCAACAAGGTGGCGCCGCCGGAAATGCGTCTGTTGCAACTGTCCATTGCCAAGGACGGGATGACGATGCCGGTGGT
GGTGGCCGATGATTCTGAATCCGGAAACTACACAGTGGTGGATGGATTCCATCGCACTACGGTGGTCAAGACCGTCAAAA
CGGTACGTGACAGTCTGGCCGGGTACATGCCCGTGGTGAAGCTCAATAAAAGCATACAGGATCGCATCACCTCGACCGTG
CGCCACAACATGGCCCGCGGCACCCACCAGGTGGAACTCTCGGCGAAACTGGTGACAGCTCTGAAAAAACACAACTGGAC
GAACGAGCGTATCGGGATGGAACTGGGTATGGATCCGGATGAAGTGTTGCGTCTGAAGCAGATCACCGGCTTGGCCGAGG
CTTTTGCAGACAAGGAATTTTCGAGGGCGTGGCAGTGA

Protein sequence :
MARKKQPVEAQAISAHVTDPISVLMEQLQSALVAASGAAVEDRVARYNALVTMAAEHVNLPHPALGMQLVPVDTVQGNDY
NPNKVAPPEMRLLQLSIAKDGMTMPVVVADDSESGNYTVVDGFHRTTVVKTVKTVRDSLAGYMPVVKLNKSIQDRITSTV
RHNMARGTHQVELSAKLVTALKKHNWTNERIGMELGMDPDEVLRLKQITGLAEAFADKEFSRAWQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1644 NP_287147.1 hypothetical protein Not tested TAI Protein 4e-32 52
Z1204 NP_286739.1 hypothetical protein Not tested TAI Protein 4e-32 52
Z1644 AAQ19140.1 putative ParB-like nuclease Not tested PAI I CL3 Protein 3e-32 51
ibrB ADD91736.1 predicted transcriptional regulator IbrB Not tested PAI-I AL862 Protein 3e-32 51
STY4584 NP_458668.1 conserved hypothetical protein Not tested SPI-7 Protein 3e-31 50
t4278 NP_807876.2 hypothetical protein Not tested SPI-7 Protein 2e-31 50
z1204 CAD33764.1 Z1204 protein Not tested PAI I 536 Protein 3e-31 50
EF0607 NP_814365.1 ParB-like nuclease domain-containing protein Not tested Not named Protein 6e-35 46
ef0120 AAM75321.1 EF0120 Not tested Not named Protein 4e-35 46
M5005_Spy_0164 YP_281528.1 parB-like nuclease Not tested Not named Protein 3e-33 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acife_1993 YP_004784439.1 ParB domain-containing protein nuclease VFG1505 Protein 1e-31 50