Gene Information

Name : LCGT_0508 (LCGT_0508)
Accession : YP_004778685.1
Strain : Lactococcus garvieae ATCC 49156
Genome accession: NC_015930
Putative virulence/resistance : Virulence
Product : iron ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 526756 - 527538 bp
Length : 783 bp
Strand : +
Note : -

DNA sequence : 
ATGTATTTTGGGGCAAAAAATTTAAATGTATATTACGGTAAAAAACAAGTTCTAAGAGATGTATCTTTGGAAATTGAGCA
AGGAAAAACGACGGCGATTATCGGAATAAATGGCTCAGGAAAGTCGACATTACTCAAAGCCTTGGGACGTTTAATAAAGT
ATGAAGGGGAAGTTATCTATAAGGAAGAACGCCTTTCTAATCGTAAAAATCTAGAAATAGCTAAAATTTTGACCTTGCTT
CCGCAAGCCATGCAAGCCCCGAGTGATATAACTGTGTATGAGCTGGTCAGTCTCGGCCGCTTTCCACATCAAAAACTTAC
ACAACAGAACTTATCGGAAGCAGACAAGCACTTTGTGGAGCAAGTCATGAAGGAGACCGAGATTTGGGAGTTACGTCACC
AAAAAGTTGCCCAACTTTCTGGTGGCCAGCGCCAGCGGGCTTTTATCACGATGATTTTAGCGCAAGACAGTGAAATTATT
CTTTTGGATGAGCCGACAACGTATCTGGATCTTTTGCACCAACTTGATATTTTAAAACTGTTAAAAACTTTTGCGAAAAA
GATGAACAAAACAGTGGTTTATGTCATCCACGACCTCAACCACGCAGCACGTTTTGCGGATAATTTAGTTATTGTAAAAG
AGGGGGAAATCTTCGCCTCTGGGCCGGTGGAAGAATTATTCACAGAGGAAATTATTCATGAAAGCTTTGGATTACATGTT
CGATTAGGGCGTGATCTTTTCTGCCAAACTCTTATGATTACAGGGGTTAAAAATGAAGATTAG

Protein sequence : 
MYFGAKNLNVYYGKKQVLRDVSLEIEQGKTTAIIGINGSGKSTLLKALGRLIKYEGEVIYKEERLSNRKNLEIAKILTLL
PQAMQAPSDITVYELVSLGRFPHQKLTQQNLSEADKHFVEQVMKETEIWELRHQKVAQLSGGQRQRAFITMILAQDSEII
LLDEPTTYLDLLHQLDILKLLKTFAKKMNKTVVYVIHDLNHAARFADNLVIVKEGEIFASGPVEELFTEEIIHESFGLHV
RLGRDLFCQTLMITGVKNED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-35 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-42 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 7e-42 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 7e-42 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 7e-42 45
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-36 44
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCGT_0508 YP_004778685.1 iron ABC transporter ATP-binding protein BAC0164 Protein 1e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LCGT_0508 YP_004778685.1 iron ABC transporter ATP-binding protein VFG0925 Protein 1e-33 45
LCGT_0508 YP_004778685.1 iron ABC transporter ATP-binding protein VFG1042 Protein 1e-36 44