Gene Information

Name : Cycma_4147 (Cycma_4147)
Accession : YP_004776082.1
Strain : Cyclobacterium marinum DSM 745
Genome accession: NC_015914
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5018968 - 5019663 bp
Length : 696 bp
Strand : +
Note : PFAM: ABC transporter; TIGRFAM: bacteriocin export ABC transporter, lactococcin 972 group; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: fbc:FB2170_07844 ABC transporter ATP-binding pro

DNA sequence : 
ATGATAACCATCAAAGATTTAGTAAAAAGCTTTCGTACAGAGGAGGTAGAAACCCTCGCGCTAAATAAAGTAAATCTCAA
AGTTGAAGCAGGAGAGTTTGTAGCCATTATGGGCCCATCAGGCTGCGGAAAATCCACCTTGCTCAACATTATAGGCATGT
TGGATAATCCAACTGAAGGCAGTTACAATTTTGCATCAAATGAGGTAGCAGGACTCCGTGAGAATCAGAGAACACAGCTC
CGAAAAGGAAACCTGGGCTTTGTTTTCCAAAGCTTTAATTTAATAGATGAATTGACCGTTTTTGAAAATGTGGAGCTGCC
TCTTATTTATTTGAAAATGGGCAAAGCAGAACGCAGAGAAAAGGTAATGCAGGTTTTGGAGCGGATGAAAATTGCCCACC
GTGAAAAACATTTTCCGCATCAATTGTCCGGAGGACAACAGCAGCGTGTAGCCATAGCTAGGGCAGTAGTCACCAAGCCC
AAGTTGATCCTGGCTGATGAACCTACAGGTAACTTGGATTCGAAAAATGGAATGCAAGTAATGAACTTGTTGACCGAACT
AAATCAAGAAGGAACGACCATCGTGATGGTAACCCACTCTGAGCATGACTCTCATTTCGCACACCGTGTAGTTAACTTGT
TCGATGGTCAAATTGTAACAGAAAGTCAAAATAGAGCCATAGGAGCCGAATTATAA

Protein sequence : 
MITIKDLVKSFRTEEVETLALNKVNLKVEAGEFVAIMGPSGCGKSTLLNIIGMLDNPTEGSYNFASNEVAGLRENQRTQL
RKGNLGFVFQSFNLIDELTVFENVELPLIYLKMGKAERREKVMQVLERMKIAHREKHFPHQLSGGQQQRVAIARAVVTKP
KLILADEPTGNLDSKNGMQVMNLLTELNQEGTTIVMVTHSEHDSHFAHRVVNLFDGQIVTESQNRAIGAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-36 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-31 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cycma_4147 YP_004776082.1 ABC transporter NC_012469.1.7686878. Protein 6e-55 51
Cycma_4147 YP_004776082.1 ABC transporter NC_008702.1.4606598. Protein 1e-40 47
Cycma_4147 YP_004776082.1 ABC transporter CP001581.1.gene798.p Protein 4e-37 44
Cycma_4147 YP_004776082.1 ABC transporter CP001581.1.gene598.p Protein 8e-36 44
Cycma_4147 YP_004776082.1 ABC transporter NC_012469.1.7685735. Protein 3e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cycma_4147 YP_004776082.1 ABC transporter VFG0869 Protein 9e-23 41
Cycma_4147 YP_004776082.1 ABC transporter VFG2059 Protein 2e-19 41