|
Name : Cycma_3603 (Cycma_3603) Accession : YP_004775551.1 Strain : Cyclobacterium marinum DSM 745 Genome accession: NC_015914 Putative virulence/resistance : Virulence Product : RNA-directed DNA polymerase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 4265401 - 4266663 bp Length : 1263 bp Strand : + Note : PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain; COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: zpr:ZPR_3312 reverse transcriptase; PFAM: RNA-directed DNA polymera DNA sequence : ATGAATTTATGGAATGAAACAAAATCAATACCGATAAGTCGCCAAATGGTTTGGGAGGCTTATCAAAAAGTGCGTTCCAA CAAAGGGAGTGCAGGAGTTGATGCGATAAGTATGGAAGAATTCGATGTGGACCGTAGAAAACATTTGTACAAACTTTGGA ATCGTATGTCATCAGGGAGTTATTTTCCCCCAGCAGTCAAAGAAGTGGAAATACCCAAGAAAGACGGTGCAGTCCGTAAA TTGGGCGTTCCCACAATCAGTGACAGAGTTGGGCAGATGGTTGTCAAAATGTTCATTGAGCCAAGATTAGAGGCAATATT CAGTACAAACTCTTACGGTTATCGACCCAATAGAAATGCCCATCAGGCATTGTCAGAGGTACGAAATAACTGTTGGAAAA ATAATTGGGTAATTGACCTAGATATCAAAGGTTTCTTTGACAACATTGACCACAATAAACTGATGCTTGCTTTAGAGAAA CACGTGCCTGAAATCTGGGTAAAACTCTATGTCAGACGATGGTTGGAAGCACCCGTTGTTACAGTATCTGGGCAACAAAT CGAAAAGCAAGGAAAAGGAACACCACAGGGTGGAGTAATCAGCCCGTTATTAGCAAATCTTTTCTTACATTATGCTTTTG ATAAATGGTTAGAAAAGATAGATAAAAATGTAGTTTTTACACGTTATGCCGATGATGTAATACTACACTGTAACACAAAA TCCCATTCAGAACAAATATTACGATTGGTACATCAAAGAATGGAATCGGTAGGGTTAGAACTACATCCACAGAAGACAAA AATTGTCTATTGCCGAGATTTTAGAAGAAGAGGAAAATACCCAACAGTCAAATTTGATTTCTTGGGATATTCTTTTCAGC CAAGAACTGCCTACTCTAAGAAAAAGGGAAAGCTGTTTATAGGTTATGATTGTGCTATAAGTATAAGTTCAAGAAAACGA ATTGCAGACAGGCTTGAAGAACTTAAGGTAAACAAACTTACTTTTAAAAGTATTGTAGGGGTGGCTCAATTCCTTAATCC AATGATTAGAGGATGGGTGCATTATTATGGTAAATTTAAGATGTTTGAACTTACCAAAGTCTTCAGATTATTGAGTAAGC GATTGGTTTGGTGGGCAAGGAAAAGGTATAAGCGATACAAAACCAGTATCAGGAAAGGTTACAAATGGTTAGCAAGAGTA CGGAGTCAATACCCCACCTTGTTTTACCATTGGCAATTTTCAGAAATAAATGTAGTAGCTTAG Protein sequence : MNLWNETKSIPISRQMVWEAYQKVRSNKGSAGVDAISMEEFDVDRRKHLYKLWNRMSSGSYFPPAVKEVEIPKKDGAVRK LGVPTISDRVGQMVVKMFIEPRLEAIFSTNSYGYRPNRNAHQALSEVRNNCWKNNWVIDLDIKGFFDNIDHNKLMLALEK HVPEIWVKLYVRRWLEAPVVTVSGQQIEKQGKGTPQGGVISPLLANLFLHYAFDKWLEKIDKNVVFTRYADDVILHCNTK SHSEQILRLVHQRMESVGLELHPQKTKIVYCRDFRRRGKYPTVKFDFLGYSFQPRTAYSKKKGKLFIGYDCAISISSRKR IADRLEELKVNKLTFKSIVGVAQFLNPMIRGWVHYYGKFKMFELTKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLARV RSQYPTLFYHWQFSEINVVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13526.1 | reverse transcriptase | Not tested | PAGI-7 | Protein | 7e-104 | 47 |
| unnamed | CAD33771.1 | putative reverse transcriptase | Not tested | PAI I 536 | Protein | 3e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cycma_3603 | YP_004775551.1 | RNA-directed DNA polymerase | VFG1512 | Protein | 2e-84 | 41 |
