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Name : Cycma_3598 (Cycma_3598) Accession : YP_004775547.1 Strain : Cyclobacterium marinum DSM 745 Genome accession: NC_015914 Putative virulence/resistance : Virulence Product : RNA-directed DNA polymerase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3344 EC number : - Position : 4259490 - 4260752 bp Length : 1263 bp Strand : + Note : PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain; COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: zpr:ZPR_3312 reverse transcriptase; PFAM: RNA-directed DNA polymera DNA sequence : ATGAATTTATGGAATGAAACAAAATCAATACCTATAAGTCGCCAAATGGTTTGGGAGGCTTATCAAAAAGTGCGTTCCAA CAAAGGGAGTGCAGGAGTTGATGCGATAAGTATGGAAAAATTCGATGTGGACCGTAGAAAACATTTGTACAAACTTTGGA ATCGTATGTCATCAGGGAGTTATTTTCCCCCAGCAGTCAAAGAAGTGGAAATACCCAAGAAAGACGGTGCAGTCCGTAAA TTGGGCGTTCCCACAATCAGTGACAGAGTTGGGCAGATGGTTGTCAAAATGTTCATTGAGCCAAGATTAGAGGCAATATT CAGTACAAACTCTTACGGTTATCGACCCAATAGAAATGCCCATCAGGCATTGTCAGAGGTACGAAATAACTGTTGGAAAA ATAATTGGGTAATTGACCTAGATATCAAAGGTTTCTTTGACAACATTGACCACAATAAACTGATGCTTGCTTTAGAGAAA CACGTGCCTGAAATCTGGGTAAAACTCTATGTCAGACGATGGTTGGAAGCACCCGTTGTTACAGTATCTGGGCAACAAAT CGAAAAGCAAGGAAAAGGAACACCACAGGGTGGAGTAATCAGCCCGTTATTAGCAAATCTTTTCTTACATTATGCTTTTG ATAAATGGTTAGAAAAGATAGATAAAAATGTAGTTTTTACACGTTATGCCGATGATGTAATACTACACTGTAACACAAAA TCCCATTCAGAACAAATATTACGATTGGTACATCAAAGAATGGAATCGGTAGGGTTAGAACTACATCCACAGAAGACAAA AATTGTCTATTGCCGAGATTTTAGAAGAAGAGGAAAATACCCAACAGTCAAATTTGATTTCTTGGGATATTCTTTTCAGC CAAGAACTGCCTACTCTAAGAAAAAGGGAAAGCTGTTTATAGGTTATGATTGTGCTATAAGTATAAGTTCAAGAAAACGA ATTGCAGACAGGCTTGAAGAACTTAAGGTAAACAAACTTACTTTTAAAAGTATTGTAGGGGTGGCTCAATTCCTTAATCC AATGATTAGAGGATGGGTGCATTATTATGGTAAATTTAAGATGTTTGAACTTACCAAAGTCTTCAGATTATTGAGTAAGC GATTGGTTTGGTGGGCAAGGAAAAGGTATAAGCGATACAAAACCAGTATCAGGAAAGGTTACAAATGGTTAGCAAGAGTA CGGAGTCAATACCCCACCTTGTTTTACCATTGGCAATTTTCAGAAATAAATGTAGTAGCTTAG Protein sequence : MNLWNETKSIPISRQMVWEAYQKVRSNKGSAGVDAISMEKFDVDRRKHLYKLWNRMSSGSYFPPAVKEVEIPKKDGAVRK LGVPTISDRVGQMVVKMFIEPRLEAIFSTNSYGYRPNRNAHQALSEVRNNCWKNNWVIDLDIKGFFDNIDHNKLMLALEK HVPEIWVKLYVRRWLEAPVVTVSGQQIEKQGKGTPQGGVISPLLANLFLHYAFDKWLEKIDKNVVFTRYADDVILHCNTK SHSEQILRLVHQRMESVGLELHPQKTKIVYCRDFRRRGKYPTVKFDFLGYSFQPRTAYSKKKGKLFIGYDCAISISSRKR IADRLEELKVNKLTFKSIVGVAQFLNPMIRGWVHYYGKFKMFELTKVFRLLSKRLVWWARKRYKRYKTSIRKGYKWLARV RSQYPTLFYHWQFSEINVVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | ABR13526.1 | reverse transcriptase | Not tested | PAGI-7 | Protein | 2e-103 | 47 |
| unnamed | CAD33771.1 | putative reverse transcriptase | Not tested | PAI I 536 | Protein | 2e-84 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cycma_3598 | YP_004775547.1 | RNA-directed DNA polymerase | VFG1512 | Protein | 1e-84 | 41 |
