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Name : Cycma_3305 (Cycma_3305) Accession : YP_004775260.1 Strain : Cyclobacterium marinum DSM 745 Genome accession: NC_015914 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 3875772 - 3878636 bp Length : 2865 bp Strand : + Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; COGs: COG0610 Type I DNA sequence : ATGACCTCACAGCCCGAACAAATAATAGAAAATAACCTAGTTACCCAACTCCAAAGGTTGGGCTATAAAAAAGTGATTAT TTGTGATGAAAATGACCTTTTGTCTAATCTCAAAAGCCAATTAGAGAAACACAATAAAATTCAACTAAGCGATAACGACT TTAAGCAAATCCTCAACTTCATCAACAAAGGCAATGTATTTGAGCGAGCTAAGATATTACGAGACCGTGTGCCCTACACC AATGCCCAAGGTGACACCAAAACGGTAGAACTCATCAACCAAATTCATTGGTGCCAAAATGAGTTTCAGGTTACACAGCA AGTGGCCATGGAAGGCACGCACAAAAACCGCTATGATGTTACCATTCTCATCAATGGTTTGCCTTTGGTTCAGGTTGAGT TAAAGCGTAGAGGTTTAGAACTCAAAGAAGCATTCAATCAAACCAACCGCTATGAAAGGCATTCTTATTGGGCAGGGCAT GGCTTGTTTCAGTTTGTGCAGGTATTTGTCATCAGCAATGGCGTAAACACCAAATACTATGCAAATGCACCTTTAAAGGC ACGTTCCTTCAAACAGACTTTTTATTGGGCAGACGAAAAGAACCGACTGATTACCCAATTGGCTGCATTTTCAGAATTGT TTTTAGAACCTTGCCACATTTCTAAAATGATTACAAAATATGTGGTGCTTAACGAATCTCAAAAAATATTGATGGTGCTT CGTCCCTATCAATTCTATGCAGTAGAAGCAATTGTAGAGCGAGTAAAAACCACTACCAAGTTCGGGTACATTTGGCACAC TACAGGGTCCGGCAAAACCTTGACTTCCTTCAAAGCAGCACAGATCTTAACCAATTTACCTCAAGTCCATAAAGTGGTTT TTGTTGTTGACCGTAAAGATTTAGATAATCAAACTACCAAAGAGTTTAACTCCTTTAGCAAAGGCAGCATTGACGGAACT AATAACACAAAAACACTAGTTAAACAACTTACTAGTGATAACAAACTCATTGTTACCACCATTCAGAAACTGAATACTGC TATAAGCAAAACCCGGTATTTGAATAAAATGGAAACATTGAAAAATGAACGCATTGTTTTCATTTTTGATGAGTGCCATA GAAGTCAGTTTGGTAAAACCCATGAAGACATTAAAAAATTCTTTGAAGACTGTCAAATGTTCGGGTTTACAGGTACGCCC ATCTTCGAACCAAATGCAGGTAAAAATGAATACGGCAAGCGAACAACCAAAATGCTTTTTGGCGATTGCTTGCACAAGTA TGTAATTACAGATGCCATCCGTGACGAAAATGTTCTTAAATTTTCGGTTGAATACATCCAAACGTTTAAAAAGAAAGACC ATATTCTTGACATCAATGTAGAAGCCATTGATGAGGCTGAGGTAATGAATGCACCCATACGGTTAGATAACATTACCGAG TATATAATTGCCAATCACAACCGAAAAACGCATAGTCGTGAGTTTACGGCTCTATTTTGTGTGTCTAGCGTGCCTGTTCT TATAGAGTATTACAAATTGCTTTTGCAGAAAAAAGAGGAAGGCAAACACCATCTGAAATTGGCAACAATTTTTTCGTATT CAGTAAATGAAGATGACAAAGATGCAGTAGGTTTTGTAGATGATGAAGAATTTTTGAACCCCAATGCATTACACGTGGCT GCTTCACCGCATACCAGGTACTTTACGCAACATACACGGGATGAATTAGAAGACTTCATCATACAGTACAACAAACAGTT TGGTACTAACTTCACAAGTAGAGACAATCAATCCTACTACAATTATTACAATGATATTGCTAAGCGTGTAAAGCACCGAC AGATAGATCTCTTAGTAGTGGTAAACATGTTCTTAACAGGCTTTGATAGCAAGCATCTGAATACCCTGTATGTAGATAAA AATCTTAGGTACCACGGTTTGATTCAAGCCTATTCCAGAACCAACAGGGTTCTTAATGAGGTGAAATCACAAGGAAACAT CGTTTGTTTTAGAAACCTTAAAGAGGCGACAGATGAAGCGATTACCCTGTTTTCAAATAAGAATGCCAAAGATGAAATCA TCATGCAGCCGTATGAGGAGTATGTGGCCAAATTCAACCAGGCATTCGATGCCTTATTGCAAATCGCGCCAACAGTAGAT AGCGTTAATGATTTAGCCAACGAAGAAGAGGAATTGGCCTTCATTCAGGCTTTTCGGGAATTGATGCGTCTGAAAAATGT ATTAACCACATTTACAGAGTTTGAGTTTGCTGATTTGACTATGAACCAGCAGTCATTTGAGGATTACAAAAGCAAATACC TTGACTTGTACGATAAGGCCAAATCACACAATCAAAAAGAGAAGGTTAGCATTTTAGAAGACATTGATTTTGAATTGGAA TTGATCCATCGTGACGAAATCAATGTTGCCTATATACTTAAATTACTCGCAAAACTGAAAGATGCAACGCCGGAAGAACA GGAAAAGCAGAAAAAAGCATTGATTGAAATCGTAGCAGGTGATGCAAAACTAAGAAGCAAGCGAGAACTGATTGAGAAAT TTATTCAAGAGAATTTACCTCATATTTCTGATTCAGATGATTTACCGGAAGAATTTGAAAATTATTGGAACGAAGAACGA AAAGTAGCTCTGAAGAAATTGAGTAAAGAGGAGAGTCTTGACGATGAAAAGCTTGAAGAAGTAATTGGGAAATACCTTTT TACAGAGAAAAAACCATTGAGAGATGATGTAATCGGACTTTTGAATAAACGACCTGCATTAAAGGAACGGGCCTCCGTAG CTGAAAGAGTGACGAACAAGATTTTAGGATTTGTAGAAACCTTTATAAGCGGGGTAGTGGGATAG Protein sequence : MTSQPEQIIENNLVTQLQRLGYKKVIICDENDLLSNLKSQLEKHNKIQLSDNDFKQILNFINKGNVFERAKILRDRVPYT NAQGDTKTVELINQIHWCQNEFQVTQQVAMEGTHKNRYDVTILINGLPLVQVELKRRGLELKEAFNQTNRYERHSYWAGH GLFQFVQVFVISNGVNTKYYANAPLKARSFKQTFYWADEKNRLITQLAAFSELFLEPCHISKMITKYVVLNESQKILMVL RPYQFYAVEAIVERVKTTTKFGYIWHTTGSGKTLTSFKAAQILTNLPQVHKVVFVVDRKDLDNQTTKEFNSFSKGSIDGT NNTKTLVKQLTSDNKLIVTTIQKLNTAISKTRYLNKMETLKNERIVFIFDECHRSQFGKTHEDIKKFFEDCQMFGFTGTP IFEPNAGKNEYGKRTTKMLFGDCLHKYVITDAIRDENVLKFSVEYIQTFKKKDHILDINVEAIDEAEVMNAPIRLDNITE YIIANHNRKTHSREFTALFCVSSVPVLIEYYKLLLQKKEEGKHHLKLATIFSYSVNEDDKDAVGFVDDEEFLNPNALHVA ASPHTRYFTQHTRDELEDFIIQYNKQFGTNFTSRDNQSYYNYYNDIAKRVKHRQIDLLVVVNMFLTGFDSKHLNTLYVDK NLRYHGLIQAYSRTNRVLNEVKSQGNIVCFRNLKEATDEAITLFSNKNAKDEIIMQPYEEYVAKFNQAFDALLQIAPTVD SVNDLANEEEELAFIQAFRELMRLKNVLTTFTEFEFADLTMNQQSFEDYKSKYLDLYDKAKSHNQKEKVSILEDIDFELE LIHRDEINVAYILKLLAKLKDATPEEQEKQKKALIEIVAGDAKLRSKRELIEKFIQENLPHISDSDDLPEEFENYWNEER KVALKKLSKEESLDDEKLEEVIGKYLFTEKKPLRDDVIGLLNKRPALKERASVAERVTNKILGFVETFISGVVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0054 | YP_300144.1 | type I site-specific restriction-modification system restriction subunit | Not tested | SCC15305cap | Protein | 0.0 | 46 |
