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Name : Cycma_3105 (Cycma_3105) Accession : YP_004775064.1 Strain : Cyclobacterium marinum DSM 745 Genome accession: NC_015914 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3634231 - 3636150 bp Length : 1920 bp Strand : + Note : PFAM: Polysaccharide biosynthesis protein; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: shg:Sph21_1834 polysaccharide biosynthesis protein CapD; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Polysaccharide b DNA sequence : TTGGAATCAAAATTTAATCCACTTAGGAAATTTTTAGAGGATGACCGTCATATTCACCCTTTTGTGATTTTGTCGGTAGA CATCTTAATTGTATTCATTTCTTTCTCTTTGGCCTACCTAATTATTGGAGGATTTGGTTTTGACCAGATTGATTTTGTCC AATATCTTATCGTAACGGCCTGCATTTGTTTAATAGCCTTACCGGTAATTTATTTTTCAAAACTGCATACCGGGCTTTTA AGGTATTCCAACATTGCAGATTTGTTCCGAATATTTTTGGCAACCATTATTTTTTCTTTGCTTTTTATCCTATTTTTCTT TGGGCTTGGCCATAGGTGGATCGCTTTGAACTATAGCTTTTTAATGTTAGTGATGTTGGTAAATTATTTTATTACTTCCA CATTACTTATTGCATTTAGGTTATTGGCGAAATCAACTTACCTCAGTTTGGCAAATAAATTCTCAAATAAAGCTGTTCAT AAGGTATTGATCTTTGGTGCCGACCAAAATGCGGTATTGGTCAAACAAGCGCTAAGTAATGACCCGGACCTTAACTATGT TGTGGAAGGTTTTTTGAGTTCTGACAGAACCATGCTAAACAATTACTTGGAGCAAAAGAAGGTTTACCACATGAAAGACC TTCCTAAGTTGAAGAAACAAAAGGACATCAAAGAATTGTTGATTACCAATGAAAATTTAAATCAAAGGGAAAAGCGAGTA GTTATCGAAAGATGTATTCGGTTGGGCATTAAGGTGTTGACCATACCTGCAGCAAAAAATTGGCTTTCAGGGGAGTTGTC CAGCAAGCAGATTAAAAAACTTCGCATTGAAGATCTGCTTCAACGTAAACCCATTGTAATTGATCAGCGGAAAGTAAAAA GTGACCTCGAAGGAAAAAAGGTTTTGGTTACAGGAGCTGCAGGCTCTATTGGATCAGAAATTGTTCGACAGGTGCTTACC TATAAACCTTCCTTGTTGATTTTATGTGACCACGCCGAATCTCCTTTGCATGATGTGCAATTGGCCATGGAGGATGAATT TCCCGATGCCAAAATGGAGGTTGTTTTGGCTGATGTAAGTAATTACGAGCGGATGCATAAGTTGTTCAATGTATGTAGAC CTCAGATCGTTTATCATGCGGCAGCTTATAAGCATGTACCGATGATTGAAAACAACCCATTTGAAGCCATTTCTGTGAAT GTGGGTGGAACAAGAAATATTGCTGACCTTGCAGTATTTTTTAAAGTGGATAAGTTTGTTATGGTATCTACAGATAAGGC TGTAAACCCCACCAATGTGATGGGGGCTTCAAAAAGGTTGGCGGAAATCTATACCCAATCTTTAAATGGAATCGAGACCT GTAATACAAAGTTTATCACAACCAGGTTTGGCAATGTTTTGGGATCCAATGGATCTGTAATCCCAAGGTTTCGCTCACAG ATTAAAAAAGGCGGACCAATTACTGTGACCCACCCGGATATTACCCGTTATTTTATGACCATTCCTGAAGCTGTCCAGCT GGTATTGGAAGCAGGAACTATGGGTAAGGGAGGAGAAATCTATGTGTTTGATATGGGTAAGCCAATTAAAATAGTGGACC TGGCAAAGAAAATGATCCAACTAGCGGGTTTGGAAGAGGGTAAAGACATTGATATCGTATTTTCAGGGTTGCGCCCGGGA GAAAAGCTCTATGAAGAATTACTCTCCTCAGCGGAGTTAACCCTACCTACCCATCATCACAAAATAAGCATTGCCAAGGT GTTACAGTATCCCTACGCTCAGGCCAATGCTAGCATTACCGAATTATTGGTGGTCAACAAGCACCATGACAATGAAGCCG TGGTAAAGAAAATGAAGGAGATCATACCGGAATTTAAAAGTAAAAATTCCATTTATGAAGGCTTGGATAAAACAGGCTGA Protein sequence : MESKFNPLRKFLEDDRHIHPFVILSVDILIVFISFSLAYLIIGGFGFDQIDFVQYLIVTACICLIALPVIYFSKLHTGLL RYSNIADLFRIFLATIIFSLLFILFFFGLGHRWIALNYSFLMLVMLVNYFITSTLLIAFRLLAKSTYLSLANKFSNKAVH KVLIFGADQNAVLVKQALSNDPDLNYVVEGFLSSDRTMLNNYLEQKKVYHMKDLPKLKKQKDIKELLITNENLNQREKRV VIERCIRLGIKVLTIPAAKNWLSGELSSKQIKKLRIEDLLQRKPIVIDQRKVKSDLEGKKVLVTGAAGSIGSEIVRQVLT YKPSLLILCDHAESPLHDVQLAMEDEFPDAKMEVVLADVSNYERMHKLFNVCRPQIVYHAAAYKHVPMIENNPFEAISVN VGGTRNIADLAVFFKVDKFVMVSTDKAVNPTNVMGASKRLAEIYTQSLNGIETCNTKFITTRFGNVLGSNGSVIPRFRSQ IKKGGPITVTHPDITRYFMTIPEAVQLVLEAGTMGKGGEIYVFDMGKPIKIVDLAKKMIQLAGLEEGKDIDIVFSGLRPG EKLYEELLSSAELTLPTHHHKISIAKVLQYPYAQANASITELLVVNKHHDNEAVVKKMKEIIPEFKSKNSIYEGLDKTG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 3e-76 | 45 |
