Gene Information

Name : Cycma_3084 (Cycma_3084)
Accession : YP_004775043.1
Strain : Cyclobacterium marinum DSM 745
Genome accession: NC_015914
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 3612088 - 3613140 bp
Length : 1053 bp
Strand : +
Note : PFAM: NAD dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGAAATTCGAAGTTAAAAACAATAAAGTACTGGTAACCGGAGGAGCAGGTTTTATTGGCTCCAATCTAATAGATATATT
ATTAGAAAACGGCAATTCAGTGGTTTGTTTGGATAATTTTTCTACCGGTAATATTCAAAATTTGGAGCTTGCACAAAGCA
ATGCAAACTTCACCTTGATTGAAGGGGATATCAGGGACAAAGATACCTGTATTCAAGCGGTAGAGGGATGTGATTATGTA
TTTCACCAGGCAGCTTTGGGATCTGTACCTCGATCTATTGCTGATCCTATTACCAGTACTGCTGTGAATATTATGGGATT
TGTTAATTTATTATTTGCAGCCAAAGAAGCAGGCGTCAAGCGCTTTATTTATGCTGCGAGTTCTTCTACCTATGGAGATC
ATAAAGCCCTTCCCAAAGTAGAGCATGTCATAGGAAATGCCCTCTCTCCTTATGCCATTACTAAATATGTGGATGAATTA
TTTGCCAAAAACTTCTCAGATATTTATGGGATAGAAACGGTGGGTTTGCGTTATTTTAATGTTTTTGGTAAAAGGCAAGA
CCCCAATGGTGGTTATGCCGCAGTAATTCCTAAATTTGTGTCCAGCTTAATCAAACACCAAAGTCCTTATATCAATGGTG
ATGGGACCAATTCCAGGGATTTTACTTATATAGACAATGTGATACAAGCCAACTTATTGGCAGCTGCTGTTCCCTCAGCA
ATTTTTAAGGAACGGATGAAGGAATACCAGGCCAACACAGCCGGTGTACCGGGAATAAATGAAGGGGCAACTATTTCCGA
AGTATTCAATGTGGCTTACGGAGAAAGAACCAGCTTAAATGAATTGGCAGCGGCCATTAAAGAAGGTCTAAGTAATTATG
ACCCGGCCATTGCTGCTATCTCTTTTCAATATGGTCCCAATAGACCGGGTGATGTGGCCCATTCCATGGCCTCCATTGAT
AAAGGAAAGACCATTTTGGGATATGTCCCGCAATATTCATTTCAAACCGGACTCAAAGAAGCCTGTGCTTGGTATTGGGA
GAACTTAAAATGA

Protein sequence : 
MKFEVKNNKVLVTGGAGFIGSNLIDILLENGNSVVCLDNFSTGNIQNLELAQSNANFTLIEGDIRDKDTCIQAVEGCDYV
FHQAALGSVPRSIADPITSTAVNIMGFVNLLFAAKEAGVKRFIYAASSSTYGDHKALPKVEHVIGNALSPYAITKYVDEL
FAKNFSDIYGIETVGLRYFNVFGKRQDPNGGYAAVIPKFVSSLIKHQSPYINGDGTNSRDFTYIDNVIQANLLAAAVPSA
IFKERMKEYQANTAGVPGINEGATISEVFNVAYGERTSLNELAAAIKEGLSNYDPAIAAISFQYGPNRPGDVAHSMASID
KGKTILGYVPQYSFQTGLKEACAWYWENLK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-70 49
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-70 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cycma_3084 YP_004775043.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 5e-71 49