Gene Information

Name : Cycma_1737 (Cycma_1737)
Accession : YP_004773722.1
Strain : Cyclobacterium marinum DSM 745
Genome accession: NC_015914
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 2027967 - 2028866 bp
Length : 900 bp
Strand : -
Note : PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: chu:CHU_2702 site-specific recombin

DNA sequence : 
ATGTCTTGGGAAAAGGAAATAAAAGCTTTTGGTTATTACTTAAAAATTGAGCGCTCTCTAAGCGAGAATTCGATTTTAGC
CTATAGGCAAGACATACAGAAGTTAGCCAACTTTATGGAGAAGAATTTTCCTGAAGTTTTACCGGAAAGGGTGCAATTGT
ATCACTTGAGACAATTTGTAAACCTCCTCGGAGAGTTTTCTATTTCGGAATTTTCTCAGGCACGGATAATTTCAGGTATC
AAAGCTTTCTTTAAGTTTATGCTTTATGAAGATAAAATCGAAGAAAACCCTTCAGACTTATTAGAGGCCCCCAAGTTGAC
GCGCACTTTGCCGGATACATTAAGCTATGCGGAAATTGAGGAAATTTTTGAAGCGATTCCTTTGGGTGAACCGGAAGGTC
ATAGGAATAGGGCAATGCTTGAAATGCTTTACAGTAGTGGTTTAAGGGTTTCTGAGCTGATCAACCTGAAATTAAGTCAG
TATTTTGATGACATAGGCTTTTTAAGAATATTAGGAAAAGGGAACAAGGAACGTCTGGTACCCATAGGCAAATCTGCTAC
CAAATACCTAAGCATATATCTCAAGGAAATAAGGGCTCATCAGGTGATTGCAAAAGGCCATGAAGATTACGTTTTTCTCA
ATAGAAGAGGAAAGAAGCTTAGTAGGGTAATGGTATTTTTAATAATAAAGAAGACGGTGGAAAAAGCAGGTCTTCATAAA
AAAGTTAGCCCTCATACTTTTAGGCACAGCTTTGCTACCCACCTTGTGGAAGGGGGGGCAGATTTGAGAGCTGTACAAGA
AATGTTAGGACATGAGAGTATCACAACAACGGAGATTTATACACACTTGGACAGGGATTATTTGCGACAAGTTTTAGATG
ATTTTCTTCCTGGAAAGTAG

Protein sequence : 
MSWEKEIKAFGYYLKIERSLSENSILAYRQDIQKLANFMEKNFPEVLPERVQLYHLRQFVNLLGEFSISEFSQARIISGI
KAFFKFMLYEDKIEENPSDLLEAPKLTRTLPDTLSYAEIEEIFEAIPLGEPEGHRNRAMLEMLYSSGLRVSELINLKLSQ
YFDDIGFLRILGKGNKERLVPIGKSATKYLSIYLKEIRAHQVIAKGHEDYVFLNRRGKKLSRVMVFLIIKKTVEKAGLHK
KVSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDRDYLRQVLDDFLPGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 5e-39 42
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 5e-39 42