Gene Information

Name : Cycma_1560 (Cycma_1560)
Accession : YP_004773548.1
Strain : Cyclobacterium marinum DSM 745
Genome accession: NC_015914
Putative virulence/resistance : Unknown
Product : IS66 Orf2 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 1842236 - 1842583 bp
Length : 348 bp
Strand : +
Note : PFAM: IS66 Orf2 like protein; InterPro IPR008878; KEGG: zpr:ZPR_3984 transposase orf1, IS66 family protein; PFAM: Transposase (), IS66 Orf2 like; SPTR: Transposase orf1, IS66 family protein

DNA sequence :
ATGCTTGCGCTATCCTCTTCATGTCGTTACTTTTTATATGATAAGCCCACTGATATGCGTTTTGGTATCAATGCCCTTTC
TGGACTGGTACGTAACAAGCTGGGCTTTGACCCCATGAATGGAGATGTGTTCATTTTTATTGGCAAGCGAGGCAACCAAA
TCCGACTTTTGCAATGGGACAAAGATGGTTTTGCCTTATATATCAAAAAGTTGGAACGAGGCACTTTTGAACGTCCTATT
CTCACCGGAACAGCCATTACGAGTACTCAACTCAGCTTCCTCTTACAGGGGGTAAGGCTAGAATCGGTACGCTACAGAAC
CCGATACACACCCTTAAAAAGGGCGTGA

Protein sequence :
MLALSSSCRYFLYDKPTDMRFGINALSGLVRNKLGFDPMNGDVFIFIGKRGNQIRLLQWDKDGFALYIKKLERGTFERPI
LTGTAITSTQLSFLLQGVRLESVRYRTRYTPLKRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 8e-15 45
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 6e-15 45
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 6e-15 45
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-13 43
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 1e-13 43
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-13 43
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 1e-13 43
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 1e-13 43
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 7e-14 43
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 7e-14 43
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-13 43
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-13 43
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-13 43
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 1e-12 42
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 1e-12 42
unnamed AAL08461.1 unknown Not tested SRL Protein 3e-13 41
Z1160 NP_286695.1 hypothetical protein Not tested TAI Protein 7e-12 41
Z1599 NP_287103.1 hypothetical protein Not tested TAI Protein 7e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cycma_1560 YP_004773548.1 IS66 Orf2 family protein VFG1665 Protein 3e-15 45
Cycma_1560 YP_004773548.1 IS66 Orf2 family protein VFG1709 Protein 4e-14 43
Cycma_1560 YP_004773548.1 IS66 Orf2 family protein VFG0792 Protein 4e-14 43
Cycma_1560 YP_004773548.1 IS66 Orf2 family protein VFG1698 Protein 2e-14 43
Cycma_1560 YP_004773548.1 IS66 Orf2 family protein VFG1052 Protein 1e-13 41