Gene Information

Name : SFBM_0957 (SFBM_0957)
Accession : YP_004771465.1
Strain : Candidatus Arthromitus sp. mouse isolate
Genome accession: NC_015913
Putative virulence/resistance : Virulence
Product : flagellar protein export ATPase FliI
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 1028618 - 1029931 bp
Length : 1314 bp
Strand : -
Note : -

DNA sequence :
ATGTTTATAGATTTTAGGAAAATGAAAAATTCTCTTGAGAGGATCGAAACAATTTATGAAGAAGGCAGAGTTAAGCGTTT
AGTTGGATTGACTATAGAGGCGGAGGGTATAATTCCATTTGTTGGGGAAATTTGTTACATATATAATGAGTACAATGAGC
GGATAGAATGTGAGGTTGTTGGAATTAATCAAGAAAGAAGTATATTGATGCCTTTTGGAGATGTGAGAGGAATTTCTACA
GGTAGCAAAGTTATTGCTACTAAAAAATTATTGACTGTTAAAATTTCAGATGAATTATTGGGCTGTGTTTTGGATGGACT
TGGAAGAGTTCAAATAGGTAGATCACCTGAAAATTACACAGAGTTCACGATAGATAATAAACCACCTATCGCTATGAAAA
GAAGGGAAATTACAGAGATAATGCAGACAGGTGTGAGAGTGATTGATGGAACTCTTACTTGTGGTGTTGGTCAGAGAGTT
GGAATATTTGCAGGATCTGGAGTTGGTAAAAGCACTTTGATGGGTATGCTTGCAAGGAATGCATCTGCAGATGTGAATGT
GATTGGACTTATTGGTGAGAGAGGTCGTGAACTTAAGGAATTTATATATCATGATTTGGGTGAGGAAGGACTTAGAAAGT
CTGTTGTAGTGTGTGCTACATCTGATGAACCTGCACTTATAAGGTTTAAAGCATCACTTGTTACAACAGCAATTGCAGAG
TATTTTAGAGAACAAGGGAAAAATGTAATTTTAATGATGGATTCTGTAACGAGATTTGCTATGGCACAAAGAGAGGTTGG
ATTAGCTATTGGTGAACCACCGGCAACAAAAGGTTATACTCCATCAGTCTTTGCACTTCTTCCTAAACTTTTAGAAAGGA
CAGGACCTTCTGAAAGTGGGGCTATTACAGCATTTTATACTGTACTTGTTGATGGCGATGATATGAATGATCCGATAGCA
GATACGGTAAGAGGAATATTGGATGGACATATTGTATTATCAAGAGCTTTAGCACATAAGAACCATTATCCAGCTATTGA
TGTATTAAAGAGTGTTAGTAGACTTATGTCTAAGATAACATCTGATGAACATAAACAGTTAGCGGGAACTGTTAGAAATT
TACTCGCAGTATATCAAGATGCTGAAGATTTAATAAATATTGGAGCATATGTTCATGGGAGTAATCCAGATATAGATAAG
GCTATTCAATATATTAATCAAATAAATGAATATTTAAAACAAAGCACAACTGAATTCACTAGTTATGAACAAAATTTAAC
TATATTGAAGGGAATATTTAATAATTTAATTTAA

Protein sequence :
MFIDFRKMKNSLERIETIYEEGRVKRLVGLTIEAEGIIPFVGEICYIYNEYNERIECEVVGINQERSILMPFGDVRGIST
GSKVIATKKLLTVKISDELLGCVLDGLGRVQIGRSPENYTEFTIDNKPPIAMKRREITEIMQTGVRVIDGTLTCGVGQRV
GIFAGSGVGKSTLMGMLARNASADVNVIGLIGERGRELKEFIYHDLGEEGLRKSVVVCATSDEPALIRFKASLVTTAIAE
YFREQGKNVILMMDSVTRFAMAQREVGLAIGEPPATKGYTPSVFALLPKLLERTGPSESGAITAFYTVLVDGDDMNDPIA
DTVRGILDGHIVLSRALAHKNHYPAIDVLKSVSRLMSKITSDEHKQLAGTVRNLLAVYQDAEDLINIGAYVHGSNPDIDK
AIQYINQINEYLKQSTTEFTSYEQNLTILKGIFNNLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-89 53
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-99 52
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-99 52
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 1e-88 52
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 8e-88 52
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-88 52
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-88 52
lscN AAO18044.1 LscN Virulence TTSS locus Protein 2e-96 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-98 51
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-98 51
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-98 51
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-98 51
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-98 51
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-84 51
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-84 51
unnamed AAL06369.1 EscN Virulence LEE Protein 2e-84 51
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-84 51
escN AAK26715.1 EscN Virulence LEE Protein 1e-85 50
escN AAL57542.1 EscN Virulence LEE Protein 1e-85 50
escN AAC38383.1 EscN Virulence LEE Protein 6e-86 50
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-86 50
escN CAC81862.1 EscN protein Virulence LEE II Protein 5e-86 50
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 6e-86 50
escN AAC31513.1 L0034 Virulence LEE Protein 3e-86 50
escN NP_290268.1 hypothetical protein Virulence LEE Protein 4e-86 50
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 3e-86 50
ECs4568 NP_312595.1 EscN Virulence LEE Protein 4e-86 50
escN CAI43874.1 EscN protein Virulence LEE Protein 3e-86 50
escN YP_003223475.1 translocator EscN Virulence LEE Protein 4e-86 50
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-97 49
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-97 49
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-76 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 9e-80 46
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-74 46
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-75 46
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-75 46
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-77 46
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 7e-78 46
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 4e-77 46
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-76 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 3e-77 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-77 45
invC AAS66861.1 InvC Not tested SSR-2 Protein 3e-76 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-82 44
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 6e-72 43
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-75 43
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-75 43
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 3e-75 43
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 3e-75 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 6e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG2144 Protein 2e-101 52
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0048 Protein 4e-100 52
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0390 Protein 4e-102 52
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0515 Protein 6e-89 52
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0192 Protein 5e-100 51
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG1254 Protein 3e-94 50
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0812 Protein 2e-86 50
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0730 Protein 4e-86 50
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG2331 Protein 5e-81 48
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG2499 Protein 1e-86 48
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG1008 Protein 3e-70 45
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG0555 Protein 1e-75 43
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG1778 Protein 5e-71 43
SFBM_0957 YP_004771465.1 flagellar protein export ATPase FliI VFG2459 Protein 1e-72 41